YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168467525, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL317
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168467525, gi....

Description	E-value	Query Range	Subject Range
gi\|117623178, gi... - gi\|117623178\|ref\|YP_852091.1\| putative acylphosphatase [Escherichia coli APEC O1], gi\|115512302\|gb\|A...	4.0E-30	[1..92]	[72..163]
ACYP_SALPA - Acylphosphatase OS=Salmonella paratyphi A GN=yccX PE=3 SV=1 ACYP_SALPA - Acylphosphatase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yccX PE=3 SV=1 gi\|197362844, gi... - gi\|197362844\|ref\|YP_002142481.1\| putative acylphosphatase [Salmonella enterica subsp. enterica serov...	7.0E-30	[1..93]	[1..93]
gi\|91071639, gi\|... - gi\|91210065\|ref\|YP_540051.1\| putative acylphosphatase [Escherichia coli UTI89], gi\|91071639\|gb\|ABE06...	2.0E-29	[1..92]	[41..132]
gi\|26246991, gi\|... - gi\|26246991\|ref\|NP_753031.1\| putative acylphosphatase [Escherichia coli CFT073], gi\|26107391\|gb\|AAN7...	4.0E-29	[1..92]	[41..132]
gi\|191172395, gi... - gi\|75240587\|ref\|ZP_00724504.1\| COG1254: Acylphosphatases [Escherichia coli F11], gi\|191172395\|ref\|ZP... ACYP_ECOL6 - Acylphosphatase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yccX PE=3 SV=2 gi\|110342750, gi... - gi\|110641158\|ref\|YP_668888.1\| putative acylphosphatase [Escherichia coli 536], gi\|110342750\|gb\|ABG68... ACYP_ECOL6 - Acylphosphatase OS=Escherichia coli O6 GN=yccX PE=3 SV=2	9.0E-29	[1..92]	[1..92]
gi\|30040753, gi\|... - gi\|30062507\|ref\|NP_836678.1\| hypothetical protein S1036 [Shigella flexneri 2a str. 2457T], gi\|300407... ACYP_SHIBS - Acylphosphatase OS=Shigella boydii serotype 4 (strain Sb227) GN=yccX PE=3 SV=1 gi\|56479784, gi\|... - gi\|56479784\|ref\|NP_706891.2\| hypothetical protein SF0969 [Shigella flexneri 2a str. 301], gi\|5638333... ACYP_SHIFL - Acylphosphatase OS=Shigella flexneri GN=yccX PE=3 SV=4	3.0E-28	[1..92]	[1..92]
gi\|253325046, gi... - gi\|254287890\|ref\|YP_003053638.1\| predicted acylphosphatase [Escherichia coli BL21(DE3)], gi\|25397719... gi\|253972983, gi... - gi\|254161082\|ref\|YP_003044190.1\| predicted acylphosphatase [Escherichia coli B str. REL606], gi\|2539... gi\|254792168, gi... - gi\|254792168\|ref\|YP_003077005.1\| acylphosphatase [Escherichia coli O157:H7 str. TW14359], gi\|2545915... gi\|75195157 - gi\|75195157\|ref\|ZP_00705227.1\| COG1254: Acylphosphatases [Escherichia coli HS] gi\|188495970, gi... - gi\|75513421\|ref\|ZP_00735825.1\| COG1254: Acylphosphatases [Escherichia coli 53638], gi\|188495970\|ref\|... gi\|194421010, gi... - gi\|83584610\|ref\|ZP_00923279.1\| COG1254: Acylphosphatases [Escherichia coli 101-1], gi\|194440046\|ref\|... EG13726 - weak acylphosphatase / Acylphosphatase, weak activity EG13726 - weak acylphosphatase / Acylphosphatase, weak activity ACYP_ECO57 - Acylphosphatase OS=Escherichia coli O157:H7 GN=yccX PE=3 SV=1 gi\|12514156, gi\|... - gi\|15800827\|ref\|NP_286843.1\| hypothetical protein Z1320 [Escherichia coli O157:H7 EDL933], gi\|125141... gi\|13360512, gi\|... - gi\|15830306\|ref\|NP_309079.1\| hypothetical protein ECs1052 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168751272, gi... - gi\|188014654\|gb\|EDU52776.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4113], gi\|168751272\|ref... gi\|168758839, gi... - gi\|189354415\|gb\|EDU72834.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4401], gi\|168758839\|ref... gi\|189365220, gi... - gi\|189365220\|gb\|EDU83636.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4501], gi\|168764815\|ref... gi\|189363047, gi... - gi\|189363047\|gb\|EDU81466.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4486], gi\|168767396\|ref... gi\|187767342, gi... - gi\|187767342\|gb\|EDU31186.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4196], gi\|168777443\|ref... gi\|208822519, gi... - gi\|208822519\|ref\|ZP_03262838.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4042], gi\|208738004... gi\|209395781, gi... - gi\|209395781\|ref\|YP_002269637.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4115], gi\|20915718... gi\|217321605, gi... - gi\|217325384\|ref\|ZP_03441468.1\| acylphosphatase [Escherichia coli O157:H7 str. TW14588], gi\|21732160... ACYP_ECOLI - Probable acylphosphatase (EC 3.6.1.7) (Acylphosphate phosphohydrolase) - Escherichia coli gi\|89107818, gi\|... - gi\|89107818\|ref\|AP_001598.1\| predicted acylphosphatase [Escherichia coli str. K-12 substr. W3110], g... gi\|189001376, gi... - gi\|189001376\|gb\|EDU70362.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4076], gi\|168780915\|ref... gi\|168787401, gi... - gi\|189372654\|gb\|EDU91070.1\| acylphosphatase [Escherichia coli O157:H7 str. EC869], gi\|168787401\|ref\|... gi\|74311525, gi\|... - gi\|74311525\|ref\|YP_309944.1\| hypothetical protein SSON_0973 [Shigella sonnei Ss046], gi\|73855002\|gb\|... gi\|189376522, gi... - gi\|189376522\|gb\|EDU94938.1\| acylphosphatase [Escherichia coli O157:H7 str. EC508], gi\|168801330\|ref\|... gi\|81240407, gi\|... - gi\|82776259\|ref\|YP_402608.1\| hypothetical protein SDY_0943 [Shigella dysenteriae Sd197], gi\|81240407... gi\|170020631, gi... - gi\|170020631\|ref\|YP_001725585.1\| acylphosphatase [Escherichia coli ATCC 8739], gi\|169755559\|gb\|ACA78... gi\|170080626, gi... - gi\|170080626\|ref\|YP_001729946.1\| acylphosphatase [Escherichia coli str. K-12 substr. DH10B], gi\|1698... gi\|195935155 - gi\|195935155\|ref\|ZP_03080537.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4024] gi\|124500048, gi... - gi\|124529093\|ref\|ZP_01700203.1\| acylphosphatase [Escherichia coli B], gi\|124500048\|gb\|EAY47526.1\| ac... gi\|208809143, gi... - gi\|208809143\|ref\|ZP_03251480.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4206], gi\|208728944... gi\|238900226, gi... - gi\|238900226\|ref\|YP_002926022.1\| putative acylphosphatase [Escherichia coli BW2952], gi\|238862122\|gb... gi\|208816046, gi... - gi\|208816046\|ref\|ZP_03257225.1\| acylphosphatase [Escherichia coli O157:H7 str. EC4045], gi\|208732694... gi\|242376783, gi... - gi\|251784510\|ref\|YP_002998814.1\| hypothetical protein B21_00979 [Escherichia coli BL21], gi\|24237678...	4.0E-28	[1..92]	[1..92]
gi\|192925664, gi... - gi\|75255120\|ref\|ZP_00727007.1\| COG1254: Acylphosphatases [Escherichia coli E22], gi\|193066695\|ref\|ZP... gi\|75208525, gi\|... - gi\|75208525\|ref\|ZP_00708843.1\| COG1254: Acylphosphatases [Escherichia coli B171], gi\|194430216\|ref\|Z...	5.0E-28	[1..92]	[1..92]
gi\|194419265, gi... - gi\|83570624\|ref\|ZP_00922068.1\| COG1254: Acylphosphatases [Shigella dysenteriae 1012], gi\|194432378\|r...	6.0E-28	[1..92]	[1..92]
gi\|191166558, gi... - gi\|75230243\|ref\|ZP_00716740.1\| COG1254: Acylphosphatases [Escherichia coli B7A], gi\|191166558\|ref\|ZP...	6.0E-28	[1..92]	[1..92]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVCIIAWV YGRVQGVGFR YTTQHEAQRL GLTGYAKNMD DGSVEVVACG DAAQVEKLIK  60
   61 WLKEGGPRSA RVDKILTEPH SPRETLTGFS IRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	2gv1A
Description:	No description for 2gv1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits