YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213427797
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213427797.

Description	E-value	Query Range	Subject Range
gi\|67849921, gi\|... - gi\|67916119\|ref\|ZP_00509840.1\| Delta 1-pyrroline-5-carboxylate reductase [Clostridium thermocellum A... gi\|196251994, gi... - gi\|196251994\|ref\|ZP_03150658.1\| pyrroline-5-carboxylate reductase [Clostridium thermocellum DSM 4150...	6.0E-53	[1..268]	[1..268]
gi\|28204459, gi\|... - gi\|28212016\|ref\|NP_782960.1\| pyrroline-5-carboxylate reductase [Clostridium tetani E88], gi\|28204459...	2.0E-52	[1..268]	[1..268]
gi\|218541204, gi... - gi\|218898056\|ref\|YP_002446467.1\| pyrroline-5-carboxylate reductase [Bacillus cereus G9842], gi\|21854... gi\|228858122, gi... - gi\|228901519\|ref\|ZP_04065702.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis IBL 4222],... gi\|228908746, gi... - gi\|228908746\|ref\|ZP_04072580.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis IBL 200], ... gi\|75764862, gi\|... - gi\|75764862\|ref\|ZP_00744228.1\| Pyrroline-5-carboxylate reductase [Bacillus thuringiensis serovar isr...	7.0E-52	[1..267]	[1..267]
gi\|70802403, gi\|... - gi\|70802403\|gb\|AAZ12308.1\| pyrroline-5-carboxylate reductase, putative [Trypanosoma brucei], gi\|6217... gi\|71749908, gi\|... - gi\|72391146\|ref\|XP_845867.1\| pyrroline-5-carboxylate reductase [Trypanosoma brucei TREU927], gi\|7174...	9.0E-52	[3..268]	[175..441]
gi\|42782087, gi\|... - gi\|42782087\|ref\|NP_979334.1\| pyrroline-5-carboxylate reductase [Bacillus cereus ATCC 10987], gi\|4273...	9.0E-52	[1..267]	[1..267]
gi\|226898835, gi... - gi\|237707625\|ref\|ZP_04538106.1\| pyrroline-5-carboxylate reductase [Escherichia sp. 3_2_53FAA], gi\|22... gi\|91209451, gi\|... - gi\|91209451\|ref\|YP_539437.1\| pyrroline-5-carboxylate reductase [Escherichia coli UTI89], gi\|91071025...	2.0E-51	[1..269]	[37..305]
gi\|49480085, gi\|... - gi\|49480085\|ref\|YP_037223.1\| pyrroline-5-carboxylate reductase [Bacillus thuringiensis serovar konku...	2.0E-51	[1..267]	[1..267]
gi\|52142529, gi\|... - gi\|52142529\|ref\|YP_084300.1\| pyrroline-5-carboxylate reductase [Bacillus cereus E33L], gi\|51975998\|g...	3.0E-51	[1..267]	[1..267]
gi\|26246388, gi\|... - gi\|26246388\|ref\|NP_752427.1\| pyrroline-5-carboxylate reductase [Escherichia coli CFT073], gi\|2610678...	6.0E-51	[1..269]	[37..305]
gi\|167532035, gi... - gi\|167631737\|ref\|ZP_02390064.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0442], g... gi\|167514661, gi... - gi\|167637154\|ref\|ZP_02395434.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0193], g... gi\|170671266, gi... - gi\|170685006\|ref\|ZP_02876231.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0465], g... gi\|170705216, gi... - gi\|170705216\|ref\|ZP_02895681.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0389], g... gi\|177649865, gi... - gi\|177649865\|ref\|ZP_02932866.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0174], g... gi\|49185927, gi\|... - gi\|49185927\|ref\|YP_029179.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Sterne], gi\|... gi\|47503581, gi\|... - gi\|47528433\|ref\|YP_019782.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. 'Ames Ancest... gi\|30263087, gi\|... - gi\|30263087\|ref\|NP_845464.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Ames], gi\|30... gi\|254760978 - gi\|254760978\|ref\|ZP_05213002.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Australia... gi\|254752460 - gi\|254752460\|ref\|ZP_05204496.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Vollum] gi\|21401019, gi\|... - gi\|65320395\|ref\|ZP_00393354.1\| COG0345: Pyrroline-5-carboxylate reductase [Bacillus anthracis str. A... gi\|254742684 - gi\|254742684\|ref\|ZP_05200369.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Kruger B] gi\|254738146 - gi\|254738146\|ref\|ZP_05195849.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. Western N... gi\|254685679 - gi\|254685679\|ref\|ZP_05149538.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. CNEVA-906... gi\|229600273, gi... - gi\|229600273\|ref\|YP_002867357.1\| pyrroline-5-carboxylate reductase [Bacillus anthracis str. A0248], ...	6.0E-51	[1..268]	[1..272]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKIGFIGC GNMGKAILGG LIASGQVLPG QIWVYTPSPD KVAALHDQYG INAAQSAQEV  60
   61 AQVADIVFGA VKPGIMVKVL SEISSSLNKD SLVVSIAAGV TLDQLARALG HDRKIIRAMP 120
  121 NTPSLVNAGM TSVTPNALVT PEDTADVLNI FRCFGEAEVI AEPMIHPVVG VSGSSPAYVF 180
  181 MFIEAMADAA VLGGMPRAQA YKFAAQAVMG SAKIVLETGK HPGELKDMVC SPGGTTIEAV 240
  241 RVLEERGFRA AVIEAMTKCM EKSEALSKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	2izzA
Description:	No description for 2izzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits