YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|200390024, gi...
Organism:	Salmonella enterica subsp. enterica serovar Virchow str. SL491
Length:	439 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|200390024, gi....

Description	E-value	Query Range	Subject Range
gi\|75512462, gi\|... - gi\|75512462\|ref\|ZP_00735001.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli 53638]... gi\|74310970, gi\|... - gi\|74310970\|ref\|YP_309389.1\| branched chain amino acid transport system II carrier protein [Shigella... gi\|192958025, gi... - gi\|75237218\|ref\|ZP_00721265.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli E11001... gi\|188015919, gi... - gi\|188015919\|gb\|EDU54041.1\| branched-chain amino acid transport system II carrier protein [Escherich... gi\|75256773, gi\|... - gi\|75256773\|ref\|ZP_00728378.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli E22], ... gi\|189355957, gi... - gi\|189355957\|gb\|EDU74376.1\| branched-chain amino acid transport system II carrier protein [Escherich... gi\|89107271, gi\|... - gi\|89107271\|ref\|AP_001051.1\| predicted branched chain amino acid transporter [Escherichia coli str. ... gi\|189368065, gi... - gi\|189368065\|gb\|EDU86481.1\| branched-chain amino acid transport system II carrier protein [Escherich... gi\|168768345, gi... - gi\|189362405\|gb\|EDU80824.1\| branched-chain amino acid transport system II carrier protein [Escherich... gi\|81239844, gi\|... - gi\|82775696\|ref\|YP_402043.1\| branched chain amino acid transport system II carrier protein [Shigella... gi\|187768333, gi... - gi\|187768333\|gb\|EDU32177.1\| branched-chain amino acid transport system II carrier protein [Escherich... EG12168 - branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, ... gi\|81244301, gi\|... - gi\|82542890\|ref\|YP_406837.1\| branched chain amino acid transport system II carrier protein [Shigella... gi\|168783260, gi... - gi\|188999382\|gb\|EDU68368.1\| branched-chain amino acid transport system II carrier protein [Escherich... gi\|194422221, gi... - gi\|83585680\|ref\|ZP_00924322.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli 101-1]... gi\|187731559, gi... - gi\|75176873\|ref\|ZP_00696989.1\| COG1114: Branched-chain amino acid permeases [Shigella boydii BS512],... gi\|194428848, gi... - gi\|75209957\|ref\|ZP_00710146.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli B171],... gi\|75230126, gi\|... - gi\|75230126\|ref\|ZP_00716630.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli B7A], ... gi\|124500225, gi... - gi\|124528888\|ref\|ZP_01700073.1\| branched-chain amino acid transport system II carrier protein [Esche... gi\|157080096, gi... - gi\|75189468\|ref\|ZP_00702735.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli E24377... gi\|157065601, gi... - gi\|75194620\|ref\|ZP_00704690.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli HS], g... gi\|209159009, gi... - gi\|209397609\|ref\|YP_002269040.1\| branched-chain amino acid transport system II carrier protein [Esch... gi\|209917613, gi... - gi\|209917613\|ref\|YP_002291697.1\| branched-chain amino acid transport protein [Escherichia coli SE11]... gi\|217324736, gi... - gi\|217324736\|ref\|ZP_03440820.1\| branched-chain amino acid transport system II carrier protein [Esche... gi\|218359732, gi... - gi\|218552964\|ref\|YP_002385877.1\| branched chain amino acid transporter (LIV-II) [Escherichia coli IA... gi\|218703682, gi... - gi\|218703682\|ref\|YP_002411201.1\| branched chain amino acid transporter (LIV-II) [Escherichia coli UM... gi\|189373764, gi... - gi\|189373764\|gb\|EDU92180.1\| branched-chain amino acid transport system II carrier protein [Escherich... gi\|189377368, gi... - gi\|189377368\|gb\|EDU95784.1\| branched-chain amino acid transport system II carrier protein [Escherich... gi\|170021227, gi... - gi\|170021227\|ref\|YP_001726181.1\| branched-chain amino acid transport system II carrier protein [Esch... gi\|169887822, gi... - gi\|170079987\|ref\|YP_001729307.1\| branched chain amino acid ABC transporter [Escherichia coli str. K-... BRNQ_ECOLI - Branched-chain amino acid transport system II carrier protein (LIV-II) - Escherichia coli gi\|195938537 - gi\|195938537\|ref\|ZP_03083919.1\| branched-chain amino-acid transport system II carrier protein [Esche... gi\|208728422, gi... - gi\|208808621\|ref\|ZP_03250958.1\| branched-chain amino acid transport system II carrier protein [Esche... gi\|208815215, gi... - gi\|208815215\|ref\|ZP_03256394.1\| branched-chain amino acid transport system II carrier protein [Esche... gi\|254791581, gi... - gi\|254791581\|ref\|YP_003076418.1\| branched chain amino acid transporter (LIV-II) [Escherichia coli O1... gi\|208737306, gi... - gi\|208823113\|ref\|ZP_03263431.1\| branched-chain amino acid transport system II carrier protein [Esche... gi\|254160468, gi... - gi\|254160468\|ref\|YP_003043576.1\| predicted branched chain amino acid transporter (LIV-II) [Escherich... gi\|253774614, gi... - gi\|254287271\|ref\|YP_003053019.1\| predicted branched chain amino acid transporter (LIV-II) [Escherich... gi\|242376179, gi... - gi\|251783906\|ref\|YP_002998210.1\| hypothetical protein B21_00353 [Escherichia coli BL21], gi\|24237617... gi\|238899689, gi... - gi\|238899689\|ref\|YP_002925485.1\| putative branched chain amino acid transporter (LIV-II) [Escherichi... BRNQ_ECO57 - Branched-chain amino acid transport system 2 carrier protein OS=Escherichia coli O157:H7 GN=brnQ PE=... gi\|13359908, gi\|... - gi\|15829705\|ref\|NP_308478.1\| branched chain amino acid transport system II carrier protein [Escheric... gi\|15800127, gi\|... - gi\|15800127\|ref\|NP_286139.1\| branched chain amino acid transport system II carrier protein [Escheric... EG12168 - branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, ...	0.0	[1..439]	[1..439]
gi\|227884591, gi... - gi\|227884591\|ref\|ZP_04002396.1\| branched chain amino acid transport system II carrier protein [Esche... gi\|237707605, gi... - gi\|237707605\|ref\|ZP_04538086.1\| branched-chain amino-acid transport system II carrier protein [Esche... gi\|215485482, gi... - gi\|215485482\|ref\|YP_002327913.1\| predicted branched chain amino acid transporter (LIV-II) [Escherich... gi\|170680091, gi... - gi\|170680091\|ref\|YP_001742535.1\| branched-chain amino acid transport system II carrier protein [Esch... gi\|91209469, gi\|... - gi\|91209469\|ref\|YP_539455.1\| branched-chain amino acid transport system II carrier protein [Escheric... gi\|218425828, gi... - gi\|218688264\|ref\|YP_002396476.1\| branched chain amino acid transporter (LIV-II) [Escherichia coli ED... gi\|26246406, gi\|... - gi\|26246406\|ref\|NP_752445.1\| branched chain amino acid ABC transporter carrier protein [Escherichia ... gi\|110342254, gi... - gi\|110640662\|ref\|YP_668390.1\| branched-chain amino acid permease [Escherichia coli 536], gi\|11034225... gi\|218364079, gi... - gi\|218557310\|ref\|YP_002390223.1\| branched chain amino acid transporter (LIV-II) [Escherichia coli S8... gi\|117622662, gi... - gi\|117622662\|ref\|YP_851575.1\| branched-chain amino-acid transport system II carrier protein [Escheri... gi\|75238728, gi\|... - gi\|75238728\|ref\|ZP_00722716.1\| COG1114: Branched-chain amino acid permeases [Escherichia coli F11], ...	0.0	[1..439]	[1..439]
gi\|194432666, gi... - gi\|83570331\|ref\|ZP_00921776.1\| COG1114: Branched-chain amino acid permeases [Shigella dysenteriae 10...	0.0	[1..439]	[1..439]
gi\|30040141, gi\|... - gi\|30061897\|ref\|NP_836068.1\| branched-chain amino-acid transport system II carrier protein [Shigella...	0.0	[1..439]	[1..439]
gi\|24050566, gi\|... - gi\|24111779\|ref\|NP_706289.1\| branched-chain amino-acid transport system II carrier protein [Shigella... gi\|110804424, gi... - gi\|110804424\|ref\|YP_687944.1\| branched chain amino acid ABC transporter carrier protein [Shigella fl...	0.0	[1..439]	[1..439]
gi\|217049, gi\|79051 - pir\|\|JQ0007 branched-chain amino acid transport system II carrier protein brnQ - Salmonella typhimur... gi\|217049\|dbj\|BA... - brnQ protein [Salmonella typhimurium]	0.0	[1..439]	[1..439]
gi\|71555933, gi\|... - gi\|71735380\|ref\|YP_274209.1\| branched-chain amino acid transport system II carrier protein [Pseudomo...	0.0	[3..438]	[103..538]
gi\|77962929, gi\|... - gi\|77962929\|ref\|ZP_00826744.1\| COG1114: Branched-chain amino acid permeases [Yersinia mollaretii ATC...	0.0	[1..437]	[1..437]
gi\|238723914, gi... - gi\|77974344\|ref\|ZP_00829885.1\| COG1114: Branched-chain amino acid permeases [Yersinia frederiksenii ...	0.0	[1..437]	[1..437]
gi\|238725433, gi... - gi\|77976370\|ref\|ZP_00831864.1\| COG1114: Branched-chain amino acid permeases [Yersinia intermedia ATC...	0.0	[1..437]	[1..437]

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Predicted Domain #1

Region A:
Residues: [1-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHQLKSRDI IALGFMTFAL FVGAGNIIFP PMVGLQAGEH VWTAAIGFLI TAVGLPVLTV  60
   61 VALAKVGGGV DSLSTPIGKV AGLLLATVCY LAVGPLFATP RTATVSFEVG IAPLTGDSAM 120
  121 PLLIYSVVYF AIVILVSLYP GKLLDTVGNF LAPLKIIALV ILSVAAIVWP AGPISNALDA 180
  181 YQNAAFSNGF VNGYLTMDTL GAMVFGIVIV NAARSRGVTE ARLLTRYTVW AGLMAGVGLT 240
  241 LLYLALFRLG SDSATLVDQS ANGAAILHAY VQHTFGGAGS FLLAALIFIA CLVTAVGLTC 300
  301 ACAEFFAQYI PLSYRTLVFI LGGFSMVVSN LGLSHLIQIS IPVLTAIYPP CIALVVLSFT 360
  361 RSWWHNSTRI IAPAMFISLL FGILDGIKAS AFGDMLPAWS QRLPLAEQGL AWLMPTVVMV 420
  421 ILAIIWDRAA GRQVTSSAH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.42
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits