YRC Public Data Repository - Protein Structure Prediction

Protein:	SYS_SALDC
Organism:	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYS_SALDC.

Description	E-value	Query Range	Subject Range
SYS_PSEAE - Seryl-tRNA synthetase OS=Pseudomonas aeruginosa GN=serS PE=3 SV=1 SYS_PSEAE - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... gi\|254235598, gi... - gi\|84320581\|ref\|ZP_00968954.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa C3719], gi\|254... gi\|194552030, gi... - gi\|84326939\|ref\|ZP_00974963.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa 2192], gi\|2542... SYS_PSEA8 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain LESB58) GN=serS PE=3 SV=1 SYS_PSEAB - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serS PE=3 SV=1 gi\|107102134 - gi\|107102134\|ref\|ZP_01366052.1\| hypothetical protein PaerPA_01003183 [Pseudomonas aeruginosa PACS2]	0.0	[1..430]	[1..426]
SYS_PSEA7 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=serS PE=3 SV=1	0.0	[1..430]	[1..426]
gi\|67155739\|ref\|... - Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP] gi\|67155739, gi\|... - gi\|67155739\|ref\|ZP_00417366.1\| Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP], gi\|67...	0.0	[1..430]	[182..607]
SYS_SHIB3 - Serine--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=serS PE=3 SV=1	0.0	[1..430]	[1..430]
SYS_SHIDS - Serine--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=serS PE=3 SV=1	0.0	[1..430]	[1..430]
SYS_ECO7I - Serine--tRNA ligase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=serS PE=3 SV=1 SYS_ECOLU - Serine--tRNA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=serS PE=3 SV=1 SYS_ECO5E - Serine--tRNA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=serS PE=3 SV=1 SYS_ECOSE - Serine--tRNA ligase OS=Escherichia coli (strain SE11) GN=serS PE=3 SV=1 SYS_ECO27 - Serine--tRNA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serS PE=3 SV=1 gi\|217326397, gi... - gi\|217326397\|ref\|ZP_03442481.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. TW14588], gi\|21... SYS_ECO8A - Serine--tRNA ligase OS=Escherichia coli O8 (strain IAI1) GN=serS PE=3 SV=1 SYS_ECO45 - Serine--tRNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=serS PE=3 SV=1 SYS_ECO81 - Serine--tRNA ligase OS=Escherichia coli O81 (strain ED1a) GN=serS PE=3 SV=1 SYS_ECO55 - Serine--tRNA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=serS PE=3 SV=1 sp\|B7UMY4\|SYS_ECO27 - Seryl-tRNA synthetase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=serS PE=3 SV=1 SYS_SHISS - Serine--tRNA ligase OS=Shigella sonnei (strain Ss046) GN=serS PE=3 SV=1 SYS_SHIBS - Serine--tRNA ligase OS=Shigella boydii serotype 4 (strain Sb227) GN=serS PE=3 SV=1 gi\|75257392, gi\|... - gi\|75257392\|ref\|ZP_00728908.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli E22], gi\|193064674\|r... gi\|188492608, gi... - gi\|75512046\|ref\|ZP_00734631.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli 53638], gi\|188492608... gi\|194438706, gi... - gi\|83585836\|ref\|ZP_00924476.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli 101-1], gi\|194438706... gi\|13360437, gi\|... - gi\|15830232\|ref\|NP_309005.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. Sakai], gi\|1336043... gi\|189372720, gi... - gi\|189372720\|gb\|EDU91136.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC869], gi\|16878732... SYS_ECO24 - Serine--tRNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=serS PE=3 SV=1 SYS_ECOL5 - Serine--tRNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=serS PE=3 SV=1 gi\|189376450, gi... - gi\|189376450\|gb\|EDU94866.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC508], gi\|16880142... SYS_SHIF8 - Serine--tRNA ligase OS=Shigella flexneri serotype 5b (strain 8401) GN=serS PE=3 SV=1 SYS_ECODH - Serine--tRNA ligase OS=Escherichia coli (strain K12 / DH10B) GN=serS PE=3 SV=1 SYS_ECOSM - Serine--tRNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=serS PE=3 SV=1 gi\|191167614, gi... - gi\|75229261\|ref\|ZP_00715826.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli B7A], gi\|191167614\|r... gi\|195939556 - gi\|195939556\|ref\|ZP_03084938.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4024] gi\|75240970, gi\|... - gi\|75240970\|ref\|ZP_00724859.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli F11], gi\|191172133\|r... gi\|208808989, gi... - gi\|208808989\|ref\|ZP_03251326.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4206], gi\|208... SYS_ECOHS - Serine--tRNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=serS PE=3 SV=1 gi\|89107743, gi\|... - gi\|89107743\|ref\|AP_001523.1\| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine [E... gi\|208732184, gi... - gi\|208815536\|ref\|ZP_03256715.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|194413610, gi... - gi\|75210418\|ref\|ZP_00710574.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli B171], gi\|194428395\|... SYS_ECOUT - Serine--tRNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=serS PE=3 SV=1 gi\|208822033, gi... - gi\|208822033\|ref\|ZP_03262352.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|168752125, gi... - gi\|188013954\|gb\|EDU52076.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4113], gi\|1687521... gi\|189355936, gi... - gi\|189355936\|gb\|EDU74355.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4401], gi\|1687569... gi\|168762973, gi... - gi\|189366796\|gb\|EDU85212.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4501], gi\|1687629... gi\|189361156, gi... - gi\|189361156\|gb\|EDU79575.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4486], gi\|1687698... gi\|168776256, gi... - gi\|187768390\|gb\|EDU32234.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4196], gi\|1687762... EG10947 - seryl-tRNA synthetase / Serine--tRNA ligase; serine hydroxamate resistance gi\|168783803, gi... - gi\|188998912\|gb\|EDU67898.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 str. EC4076], gi\|1687838... SYS_ECOLI - Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) - Escherichia coli SYS_ECOL6 - Serine--tRNA ligase OS=Escherichia coli O6 GN=serS PE=3 SV=1 SYS_SHIFL - Serine--tRNA ligase OS=Shigella flexneri GN=serS PE=3 SV=1 gi\|24112268, gi\|... - gi\|24112268\|ref\|NP_706778.1\| seryl-tRNA synthetase [Shigella flexneri 2a str. 301], gi\|24051120\|gb\|A... gi\|254591493, gi... - gi\|254792093\|ref\|YP_003076930.1\| seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serin... SYS_ECOL6 - Serine--tRNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=serS PE=3 SV=1 gi\|254161007, gi... - gi\|254161007\|ref\|YP_003044115.1\| seryl-tRNA synthetase [Escherichia coli B str. REL606], gi\|25397290... gi\|30040626, gi\|... - gi\|30062380\|ref\|NP_836551.1\| seryl-tRNA synthetase [Shigella flexneri 2a str. 2457T], gi\|30040626\|gb... gi\|253325122, gi... - gi\|254287815\|ref\|YP_003053563.1\| seryl-tRNA synthetase [Escherichia coli BL21(DE3)], gi\|253977122\|gb... SYS_ECO57 - Serine--tRNA ligase OS=Escherichia coli O157:H7 GN=serS PE=3 SV=1 gi\|242376708, gi... - gi\|251784435\|ref\|YP_002998739.1\| hypothetical protein B21_00904 [Escherichia coli BL21], gi\|24237670... EG10947 - seryl-tRNA synthetase / Serine--tRNA ligase; serine hydroxamate resistance SYS_ECOBW - Serine--tRNA ligase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=serS PE=3 SV=1 gi\|226898327, gi... - gi\|237707117\|ref\|ZP_04537598.1\| seryl-tRNA synthetase [Escherichia sp. 3_2_53FAA], gi\|226898327\|gb\|E... gi\|227838892, gi... - gi\|227884140\|ref\|ZP_04001945.1\| seryl-tRNA synthetase [Escherichia coli 83972], gi\|227838892\|gb\|EEJ4... SYS_ECOLC - Serine--tRNA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=serS PE=3 SV=1 SYS_ECOK1 - Serine--tRNA ligase OS=Escherichia coli O1:K1 / APEC GN=serS PE=3 SV=1 gi\|124531982, gi... - gi\|124531982\|ref\|ZP_01702041.1\| seryl-tRNA synthetase [Escherichia coli B], gi\|124498244\|gb\|EAY45765...	0.0	[1..430]	[1..430]
gi\|193070743, gi... - gi\|75234424\|ref\|ZP_00718785.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli E110019], gi\|1930707...	0.0	[1..430]	[1..430]
gi\|25293153 - pir\|\|H85614 hypothetical protein serS [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12514055, gi\|... - gi\|15800756\|ref\|NP_286770.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi\|12514055\|gb...	0.0	[1..430]	[1..430]
SYS_PSEPF - Serine--tRNA ligase OS=Pseudomonas fluorescens (strain Pf0-1) GN=serS PE=3 SV=1	0.0	[1..430]	[1..426]
gi\|45441041, gi\|... - gi\|45441041\|ref\|NP_992580.1\| seryl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001], gi\|... gi\|22126673, gi\|... - gi\|22126673\|ref\|NP_670096.1\| seryl-tRNA synthetase [Yersinia pestis KIM], gi\|21959689\|gb\|AAM86347.1\|... gi\|16121659, gi\|... - gi\|218928527\|ref\|YP_002346402.1\| seryl-tRNA synthetase [Yersinia pestis CO92], gi\|16121659\|ref\|NP_40... SYS_YERPS - Serine--tRNA ligase OS=Yersinia pseudotuberculosis GN=serS PE=3 SV=1 SYS_YERPS - Serine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=serS PE=3 SV=1 SYS_YERPG - Serine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=serS PE=3 SV=1 SYS_YERP3 - Serine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=serS PE=3 SV=1 SYS_YERPE - Serine--tRNA ligase OS=Yersinia pestis GN=serS PE=3 SV=1 gi\|229841348, gi... - gi\|229841348\|ref\|ZP_04461507.1\| Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2]... gi\|229843453, gi... - gi\|229843453\|ref\|ZP_04463599.1\| Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India ... gi\|229895825, gi... - gi\|229895825\|ref\|ZP_04510995.1\| Seryl-tRNA synthetase [Yersinia pestis Pestoides A], gi\|229700748\|gb... SYS_YERPY - Serine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=serS PE=3 SV=1 SYS_YERPB - Serine--tRNA ligase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=serS PE=3 SV=1 gi\|89105522, gi\|... - gi\|89105522\|ref\|ZP_01178040.1\| COG0172: Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str... SYS_YERPA - Serine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=serS PE=3 SV=1 SYS_YERPN - Serine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=serS PE=3 SV=1 gi\|165924544, gi... - gi\|165924544\|ref\|ZP_02220376.1\| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F19910... gi\|149366636, gi... - gi\|149366636\|ref\|ZP_01888670.1\| seryl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|149291010\|gb\|E... gi\|166009792, gi... - gi\|166009792\|ref\|ZP_02230690.1\| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001]... SYS_YERPP - Serine--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=serS PE=3 SV=1 gi\|166211248, gi... - gi\|166211248\|ref\|ZP_02237283.1\| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004... gi\|167400076, gi... - gi\|167400076\|ref\|ZP_02305594.1\| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454... gi\|166962445, gi... - gi\|167419704\|ref\|ZP_02311457.1\| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1... gi\|167056885, gi... - gi\|167424036\|ref\|ZP_02315789.1\| seryl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973...	0.0	[1..430]	[1..430]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDPNLLRNE PDAVAEKLAR RGFKLDVDKL RALEERRKVL QVNTENLQAE RNSRSKSIGQ  60
   61 AKARGEDIEP LRLEVNKLGE ELDAAKAELD TLLAEIRDIA LTIPNLPADE VPVGKDENDN 120
  121 VEVSRWGTPR EFDFEIRDHV TLGEMHSGLD FAAAVKLTGS RFVVMKGQIA RMHRALSQFM 180
  181 LDLHTEQHGY SENYVPYLVN HDTLYGTGQL PKFAGDLFHT RPLEEEADSS NYALIPTAEV 240
  241 PLTNLVRDEI IDEDQLPIKM TAHTPCFRSE AGSYGRDTRG LIRMHQFDKV EMVQIVRPED 300
  301 SMAALEEMTG HAEKVLQLLG LPYRKIILCT GDMGFGACKT YDLEVWVPAQ NTYREISSCS 360
  361 NVWDFQARRM QARCRSKSDK KTRLVHTLNG SGLAVGRTLV AVMENYQQAD GRIEVPEVLR 420
  421 PYMNGLEYIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2dq3A
Description:	No description for 2dq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits