YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190407097
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190407097.

Description	E-value	Query Range	Subject Range
gi\|190407097 - gi\|190407097\|gb\|EDV10364.1\| peroxisomal membrane protein PEX14 [Saccharomyces cerevisiae RM11-1a] PEX14_YEAST - Peroxisomal membrane protein PEX14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PEX14... PEX14 - Peroxisomal membrane peroxin that is a central component of the peroxisomal protein import machinery... gi\|151943660 - gi\|151943660\|gb\|EDN61970.1\| peroxin [Saccharomyces cerevisiae YJM789]	2.0E-85	[1..341]	[1..341]
gi\|85085658 - gi\|85085658\|ref\|XP_957540.1\| hypothetical protein NCU03901 [Neurospora crassa OR74A] gi\|32405214, gi\|... - gi\|32405214\|ref\|XP_323220.1\| hypothetical protein [Neurospora crassa], gi\|28918633\|gb\|EAA28304.1\| co...	1.0E-65	[8..327]	[3..343]
PEX14_MOUSE - Peroxisomal membrane protein PEX14 OS=Mus musculus GN=Pex14 PE=1 SV=1	7.0E-62	[9..303]	[25..288]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-61	[8..327]	[3..347]
gi\|4126962, gi\|2... - gi\|4126962\|dbj\|BAA36835.1\| peroxisomal membrane anchor protein [Rattus norvegicus], gi\|25453374\|ref\|...	7.0E-60	[9..303]	[25..288]
PEX14_CRILO - Peroxisomal membrane protein PEX14 OS=Cricetulus longicaudatus GN=PEX14 PE=2 SV=1	1.0E-58	[9..303]	[25..288]
PEX14 - peroxisomal biogenesis factor 14 gi\|114553893 - gi\|114553893\|ref\|XP_001162201.1\| PREDICTED: similar to peroxisomal membrane anchor protein HsPex14p ... gi\|123984941, gi... - gi\|60821767\|gb\|AAX36586.1\| peroxisomal biogenesis factor 14 [synthetic construct], gi\|123998459\|gb\|A...	5.0E-58	[9..302]	[25..287]
PEX14_PICAN - Peroxisomal membrane protein PER10 OS=Pichia angusta GN=PEX14 PE=3 SV=1 PEX14_PICAN, PEX... - (P78723) Peroxisomal membrane protein PER10 (Peroxin-14), Peroxisomal membrane protein PER10 OS=Pich...	8.0E-53	[9..318]	[10..318]
PEX14_PICPA - Peroxisomal membrane protein PEX14 OS=Komagataella pastoris GN=PEX14 PE=1 SV=1 jgi\|Picpa1\|40303... - null gi\|238034041, gi... - gi\|254574266\|ref\|XP_002494242.1\| Peroxisomal membrane peroxin that is a central component of the per...	5.0E-50	[5..309]	[1..356]
PEX14_SCHPO - Peroxisomal membrane protein pex14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pex14 P... pex14 - peroxisomal membrane anchor protein	7.0E-48	[9..272]	[2..245]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVVSKDRK ALFDSAVSFL KDESIKDAPL LKKIEFLKSK GLTEKEIEIA MKEPKKDGIV  60
   61 GDEVSKKIGS TENRASQDMY LYEAMPPTLP HRDWKDYFVM ATATAGLLYG AYEVTRRYVI 120
  121 PNIL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [125-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEAKSKLEGD KKEIDDQFSK IDTVLNAIEA EQAEFRKKES ETLKELSDTI AELKQALVQT  60
   61 TRSREKIEDE FRIVKLEVVN MQNTIDKFVS DNDGMQELNN IQKEMESLKS LMNNRMESGN 120
  121 AQDNRLFSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [254-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPNGIPGIDT IPSASEILAK MGMQEESDKE KENGSDANKD DNAVPAWKKA REQTIDSNAS  60
   61 IPEWQKNTAA NEISVPDWQN GQVEDSIP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits