YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189003332, gi...
Organism:	Escherichia coli O157:H7 str. EC4076
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189003332, gi....

Description	E-value	Query Range	Subject Range
gi\|75235644, gi\|... - gi\|75235644\|ref\|ZP_00719818.1\| hypothetical protein EcolE1_01002628 [Escherichia coli E110019], gi\|1...	287.0	[0..1]	[215..1]
gi\|187733988, gi... - gi\|75176379\|ref\|ZP_00696523.1\| hypothetical protein SboyB_01003608 [Shigella boydii BS512], gi\|18773...	286.0	[0..1]	[215..1]
gi\|75256963, gi\|... - gi\|75256963\|ref\|ZP_00728539.1\| hypothetical protein EcolE2_01003212 [Escherichia coli E22], gi\|19306... gi\|191166800, gi... - gi\|75230033\|ref\|ZP_00716543.1\| hypothetical protein EcolB7_01001721 [Escherichia coli B7A], gi\|19116...	286.0	[0..1]	[215..1]
gi\|82545171, gi\|... - gi\|82545171\|ref\|YP_409118.1\| hypothetical protein SBO_2764 [Shigella boydii Sb227], gi\|81246582\|gb\|A...	285.0	[0..1]	[215..1]
gi\|157077604, gi... - gi\|75187484\|ref\|ZP_00700751.1\| hypothetical protein EcolE_01000715 [Escherichia coli E24377A], gi\|15...	282.0	[0..1]	[215..1]
gi\|62129074, gi\|... - gi\|62181441\|ref\|YP_217858.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	276.0	[0..1]	[213..1]
gi\|194407237, gi... - gi\|194448933\|ref\|YP_002046897.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. ... gi\|167993180, gi... - gi\|205328771\|gb\|EDZ15535.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. enter... gi\|205338034, gi... - gi\|205338034\|gb\|EDZ24798.1\| crispr-associated protein, Cse3 family [Salmonella enterica subsp. enter... gi\|16766245, gi\|... - gi\|16766245\|ref\|NP_461860.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421489\|... lcl\|NC_016856.1_... - [gene=ygcH] [protein=putative cytoplasmic protein] [protein_id=YP_005239052.1] [location=complement(...	274.0	[0..1]	[213..1]
gi\|90438177, gi\|... - gi\|90580720\|ref\|ZP_01236524.1\| hypothetical protein VAS14_16322 [Vibrio angustum S14], gi\|90438177\|g...	236.0	[0..1]	[211..1]
gi\|197095291, gi... - gi\|197363814\|ref\|YP_002143451.1\| hypothetical protein SSPA2606 [Salmonella enterica subsp. enterica ... gi\|56129143, gi\|... - gi\|56414886\|ref\|YP_151961.1\| hypothetical protein SPA2795 [Salmonella enterica subsp. enterica serov...	233.0	[0..1]	[214..1]
gi\|196111468, gi... - gi\|88793936\|ref\|ZP_01109648.1\| hypothetical protein MADE_03906 [Alteromonas macleodii 'Deep ecotype'...	231.0	[0..1]	[213..1]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLSRITLHT GQLSPAQLLH LVDRGEYVMH QWLWDLFPGG KERQFLYRRE ELQGAFRFFV  60
   61 LSQERPAESE TFTIECRSFV PELRTGQQLC FNLRANPTIC KAGKRHDLLM EAKRQVRGQA 120
  121 EGSDVWLHQQ QAALDWLAAQ GERSGFTLLD TSVDAYRQQQ LRRENSRQLI QFSSVDYTGM 180
  181 LTVTDPGLFL QRLSQGYGKS RAFGCGLMLI KPGAEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	1wj9A
Description:	Crystal structure of a CRISPR-associated protein from thermus thermophilus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits