YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208735853, gi...
Organism:	Escherichia coli O157:H7 str. EC4045
Length:	431 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208735853, gi....

Description	E-value	Query Range	Subject Range
GLGC_SHIB3 - Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ... GLGC_SHIBS - Glucose-1-phosphate adenylyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=glgC PE=3 SV...	342.0	[0..1]	[431..1]
gi\|226839103, gi... - gi\|254038597\|ref\|ZP_04872653.1\| glucose-1-phosphate adenylyltransferase [Escherichia sp. 1_1_43], gi... gi\|26110470, gi\|... - gi\|26250041\|ref\|NP_756081.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli CFT073], gi\|2... gi\|24114696, gi\|... - ref\|NP_709206.1\| glucose-1-phosphate adenylyltransferase [Shigella flexneri 2a str. 301], gb\|AAN449...	341.0	[0..1]	[431..13]
gi\|299130 - gi\|299130\|gb\|AAB26162.1\| ADPglucose pyrophosphorylase; ADPGlc PPase [Escherichia coli]	341.0	[0..1]	[431..1]
gi\|226902434, gi... - gi\|237703170\|ref\|ZP_04533651.1\| glucose-1-phosphate adenylyltransferase GlgC [Escherichia sp. 3_2_53... gi\|91212913, gi\|... - gi\|91212913\|ref\|YP_542899.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli UTI89], gi\|91... gi\|115514828, gi... - gi\|117625704\|ref\|YP_859027.1\| glucose-1-phosphate adenylyltransferase [Escherichia coli APEC O1], gi...	340.0	[0..1]	[431..13]
GLGC_SALPA - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=glg... GLGC_SALTY - Glucose-1-phosphate adenylyltransferase OS=Salmonella typhimurium GN=glgC PE=3 SV=2 GLGC_SALPA - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A GN=glgC PE=3 SV=1 gi\|199603949, gi... - gi\|200386851\|ref\|ZP_03213463.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|204322227, gi... - gi\|204928794\|ref\|ZP_03219993.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... GLGC_SALEP - Glucose-1-phosphate adenylyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=glgC PE=3 ... GLGC_SALHS - Glucose-1-phosphate adenylyltransferase OS=Salmonella heidelberg (strain SL476) GN=glgC PE=3 SV=1 GLGC_SALSV - Glucose-1-phosphate adenylyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=glgC PE=3 ... gi\|197264772, gi... - gi\|197264772\|ref\|ZP_03164846.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... lcl\|NC_016856.1_... - [gene=glgC] [protein=glucose-1-phosphate adenylyltransferase] [protein_id=YP_005239741.1] [location=... GLGC_SALPK - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=glgC PE=3 SV... gi\|168235124, gi... - gi\|197291593\|gb\|EDY30945.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALTY - Glucose-1-phosphate adenylyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... gi\|168241681, gi... - gi\|205338928\|gb\|EDZ25692.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... gi\|168465190, gi... - gi\|195632335\|gb\|EDX50819.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALNS - Glucose-1-phosphate adenylyltransferase OS=Salmonella newport (strain SL254) GN=glgC PE=3 SV=1 gi\|167990744, gi... - gi\|205330818\|gb\|EDZ17582.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALTY - Glucose-1-phosphate adenylyltransferase OS=Salmonella typhimurium GN=glgC PE=3 SV=2	335.0	[0..1]	[422..1]
gi\|168260741, gi... - gi\|205350446\|gb\|EDZ37077.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... gi\|168232677, gi... - gi\|205333146\|gb\|EDZ19910.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALA4 - Glucose-1-phosphate adenylyltransferase OS=Salmonella agona (strain SL483) GN=glgC PE=3 SV=1 gi\|205344381, gi... - gi\|205344381\|gb\|EDZ31145.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... gi\|238910462 - gi\|238910462\|ref\|ZP_04654299.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|205325539, gi... - gi\|205325539\|gb\|EDZ13378.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ente... GLGC_SALCH - Glucose-1-phosphate adenylyltransferase OS=Salmonella choleraesuis GN=glgC PE=3 SV=1 GLGC_SALPB - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=g... GLGC_SALCH - Glucose-1-phosphate adenylyltransferase OS=Salmonella choleraesuis GN=glgC PE=3 SV=1 GLGC_SALPB - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=g... GLGC_SALPC - Glucose-1-phosphate adenylyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=glgC PE=3 SV=1 GLGC_SALCH - Glucose-1-phosphate adenylyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=glgC PE=3 SV=1	335.0	[0..1]	[422..1]
gi\|29144252, gi\|... - gi\|29144252\|ref\|NP_807594.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ent... gi\|16762765 - gi\|16762765\|ref\|NP_458382.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ent... gi\|213980067 - gi\|213980067\|ref\|ZP_03407326.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|213650010 - gi\|213650010\|ref\|ZP_03380063.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|214002860 - gi\|214002860\|ref\|ZP_03413595.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|213053095 - gi\|213053095\|ref\|ZP_03345973.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|213023773 - gi\|213023773\|ref\|ZP_03338220.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|213583173 - gi\|213583173\|ref\|ZP_03364999.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... gi\|213426867 - gi\|213426867\|ref\|ZP_03359617.1\| glucose-1-phosphate adenylyltransferase [Salmonella enterica subsp. ... GLGC_SALTI - Glucose-1-phosphate adenylyltransferase OS=Salmonella typhi GN=glgC PE=3 SV=1 GLGC_SALTI - Glucose-1-phosphate adenylyltransferase OS=Salmonella typhi GN=glgC PE=3 SV=1	334.0	[0..1]	[422..1]

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Predicted Domain #1

Region A:
Residues: [1-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLEKNDHL MLARQLPLKS VALILAGGRG TRLKDLTNKR AKPAVHFGGK FRIIDFALSN  60
   61 CINSGIRRMG VITQYQSHTL VQHIQRGWSF FNEEMNEFVD LLPAQQRMKG ENWYRGTADA 120
  121 VTQNLDIIRR YKAEYVVILA GDHIYKQDYS RMLIDHVEKG ARCTVACMPV PIEEASAFGV 180
  181 MAVDENDKII EFVEKPANPP SMPNDPSKSL ASMGIYVFDA DYLYELLEED DRDENSSHDF 240
  241 GKDLIPKITE AGLAYAHPFP LSCVQSDPDA EPYWRDVGTL EAYWKANLDL ASVVPELDMY 300
  301 DRNWPIRTYN ESLPPAKFVQ DRSGSHGMTL NSLVSGGCVI SGSVVVQSVL FSRVRVNSFC 360
  361 NIDSAVLLPE VWVGRSCRLR RCVIDRACVI PEGMVIGENA EEDARRFYRS EEGIVLVTRE 420
  421 MLRKLGHKQE R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.522879
Match:	1yp2A
Description:	Crystal structure of potato tuber ADP-glucose pyrophosphorylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.59855937987599	bayes_pls_golite062009
acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	2.31513836185329	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.04393180556087	bayes_pls_golite062009
O-acyltransferase activity	1.75961983651531	bayes_pls_golite062009
UDP-glycosyltransferase activity	1.51711005399931	bayes_pls_golite062009
cytidylyltransferase activity	1.46439247968206	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009
glucose-1-phosphate adenylyltransferase activity	1.1107654322416	bayes_pls_golite062009
acyltransferase activity	1.1088759555825	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.10852250644129	bayes_pls_golite062009
transferase activity, transferring acyl groups	0.886009567107207	bayes_pls_golite062009
3-deoxy-manno-octulosonate cytidylyltransferase activity	0.83115346830439	bayes_pls_golite062009
nucleotidyltransferase activity	0.67147527259372	bayes_pls_golite062009
uridylyltransferase activity	0.54930147038803	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	0.48277064848483	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.38929738612511	bayes_pls_golite062009
glucose-1-phosphate thymidylyltransferase activity	0.204810937394121	bayes_pls_golite062009
guanylyltransferase activity	0.14847697203788	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	0.10541627748542	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: