YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|217038307
Organism:	Oryctolagus cuniculus
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|217038307.

Description	E-value	Query Range	Subject Range
gi\|60653701, gi\|... - gi\|60653703\|gb\|AAX29545.1\| sorting nexin 3 [synthetic construct], gi\|60653701\|gb\|AAX29544.1\| sorting...	6.0E-47	[1..162]	[1..162]
gi\|3126979 - gi\|3126979\|gb\|AAC16018.1\| SDP3 [Homo sapiens]	9.0E-47	[1..162]	[1..162]
SNX3_MOUSE - Sorting nexin-3 OS=Mus musculus GN=Snx3 PE=1 SV=3	3.0E-46	[1..162]	[1..162]
gi\|45360713, gi\|... - gi\|45360713\|ref\|NP_989030.1\| sorting nexin 12 [Xenopus (Silurana) tropicalis], gi\|38174116\|gb\|AAH614...	3.0E-46	[1..162]	[1..162]
gi\|300676927\|gb\|... - PREDICTED: sorting nexin-3 isoform X1 [Zonotrichia albicollis], sorting nexin 3 [Zonotrichia albicol... gi\|197127399, gi... - gi\|197127400\|gb\|ACH43898.1\| putative sorting nexin 3 [Taeniopygia guttata], gi\|197127399\|gb\|ACH43897... gi\|53136422, gi\|... - gi\|57530297\|ref\|NP_001006408.1\| sorting nexin 3 [Gallus gallus], gi\|53136422\|emb\|CAG32540.1\| hypothe...	4.0E-46	[1..161]	[1..161]
gi\|169146136, gi... - gi\|80751127\|ref\|NP_001032183.1\| sorting nexin 3 [Danio rerio], gi\|77748450\|gb\|AAI07639.1\| Sorting ne...	4.0E-46	[1..162]	[1..162]
gi\|148232628, gi... - gi\|50415457\|gb\|AAH77549.1\| LOC494587 protein [Xenopus laevis], gi\|148232628\|ref\|NP_001087944.1\| hypo...	5.0E-46	[1..162]	[1..162]
gi\|21538835 - gi\|21538835\|gb\|AAM61764.1\|AF461063_3 sorting nexin 3 [Takifugu rubripes]	2.0E-45	[1..162]	[1..162]
gi\|114608757 - gi\|114608757\|ref\|XP_001148744.1\| PREDICTED: sorting nexin 3 isoform 2 [Pan troglodytes]	4.0E-45	[1..162]	[1..161]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETVADTRR LITKPQNLND AYGPPSNFLE IDVSNPQTVG VGRGRFTTYE IRVKTNLPIF  60
   61 KLKESTVRRR YSDFEWLRSE LERESKVVVP PLPGKAFLRQ LPFRGDDGIF DDNFIEERKQ 120
  121 GLEQFINKVA GHPLAQNERC LHMFLQDEII DKSYTPSKIR HA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	2cskA
Description:	Solution structure of PX domain from human SNX12
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits