YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|161615518, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|161615518, gi....

Description	E-value	Query Range	Subject Range
gi\|194432691, gi... - gi\|83570261\|ref\|ZP_00921707.1\| COG3034: Uncharacterized protein conserved in bacteria [Shigella dyse...	4.0E-76	[1..246]	[1..246]
gi\|13359708, gi\|... - gi\|15829505\|ref\|NP_308278.1\| hypothetical protein ECs0251 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110342053, gi... - gi\|110640461\|ref\|YP_668189.1\| hypothetical protein ECP_0254 [Escherichia coli 536], gi\|110342053\|gb\|... gi\|4902960, gi\|9... - gi\|984580\|dbj\|BAA07586.1\| YafK [Escherichia coli W3110], gi\|89107099\|ref\|AP_000879.1\| hypothetical p... gi\|91209312, gi\|... - gi\|91209312\|ref\|YP_539298.1\| hypothetical protein UTI89_C0264 [Escherichia coli UTI89], gi\|91070886\|... YAFK_ECO57 - Putative L,D-transpeptidase YafK OS=Escherichia coli O157:H7 GN=yafK PE=3 SV=1 gi\|15799929, gi\|... - gi\|15799929\|ref\|NP_285941.1\| hypothetical protein Z0282 [Escherichia coli O157:H7 EDL933], gi\|125129... EG13148 - L,D-transpeptidase-related protein / L,D-transpeptidase-related protein, function unknown gi\|226898967, gi... - gi\|237707757\|ref\|ZP_04538238.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238860270, gi... - gi\|238899616\|ref\|YP_002925412.1\| hypothetical protein BWG_0210 [Escherichia coli BW2952], gi\|2388602... gi\|242376055, gi... - gi\|251783782\|ref\|YP_002998086.1\| hypothetical protein B21_00223 [Escherichia coli BL21], gi\|24237605... gi\|253325796, gi... - gi\|254287143\|ref\|YP_003052891.1\| hypothetical protein ECD_00219 [Escherichia coli BL21(DE3)], gi\|253... gi\|253972241, gi... - gi\|254160340\|ref\|YP_003043448.1\| hypothetical protein ECB_00219 [Escherichia coli B str. REL606], gi... gi\|254791383, gi... - gi\|254791383\|ref\|YP_003076220.1\| secreted protein [Escherichia coli O157:H7 str. TW14359], gi\|254590... gi\|168800338, gi... - gi\|189377308\|gb\|EDU95724.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189370756, gi... - gi\|189370756\|gb\|EDU89172.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|169887688, gi... - gi\|170079853\|ref\|YP_001729173.1\| hypothetical protein ECDH10B_0206 [Escherichia coli str. K-12 subst... gi\|170021388, gi... - gi\|170021388\|ref\|YP_001726342.1\| hypothetical protein EcolC_3396 [Escherichia coli ATCC 8739], gi\|16... gi\|195938627 - gi\|195938627\|ref\|ZP_03084009.1\| hypothetical protein EscherichcoliO157_19732 [Escherichia coli O157:... EG13148 - L,D-transpeptidase-related protein / L,D-transpeptidase-related protein, function unknown gi\|170680694, gi... - gi\|170680694\|ref\|YP_001742344.1\| hypothetical protein EcSMS35_0235 [Escherichia coli SMS-3-5], gi\|17... gi\|208813045, gi... - gi\|208813045\|ref\|ZP_03254374.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208808317, gi... - gi\|208808317\|ref\|ZP_03250654.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168757252, gi... - gi\|189355746\|gb\|EDU74165.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188015594, gi... - gi\|188015594\|gb\|EDU53716.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189361102, gi... - gi\|189361102\|gb\|EDU79521.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168763465, gi... - gi\|189366356\|gb\|EDU84772.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|188999628, gi... - gi\|188999628\|gb\|EDU68614.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187768412, gi... - gi\|187768412\|gb\|EDU32256.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... YAFK_ECOLI - Hypothetical protein yafK precursor - Escherichia coli gi\|75513627, gi\|... - gi\|75513627\|ref\|ZP_00736018.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218698832, gi... - gi\|218698832\|ref\|YP_002406461.1\| hypothetical protein ECIAI39_0428 [Escherichia coli IAI39], gi\|2183... gi\|74310866, gi\|... - gi\|74310866\|ref\|YP_309285.1\| hypothetical protein SSON_0266 [Shigella sonnei Ss046], gi\|73854343\|gb\|... gi\|218693708, gi... - gi\|218693708\|ref\|YP_002401375.1\| hypothetical protein EC55989_0248 [Escherichia coli 55989], gi\|2183... gi\|190908289, gi... - gi\|75241701\|ref\|ZP_00725538.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192931151, gi... - gi\|75258771\|ref\|ZP_00730161.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218430594, gi... - gi\|218703497\|ref\|YP_002411016.1\| hypothetical protein ECUMN_0245 [Escherichia coli UMN026], gi\|21843... gi\|82775615, gi\|... - gi\|82775615\|ref\|YP_401962.1\| hypothetical protein SDY_0250 [Shigella dysenteriae Sd197], gi\|81239763... gi\|82542817, gi\|... - gi\|82542817\|ref\|YP_406764.1\| hypothetical protein SBO_0215 [Shigella boydii Sb227], gi\|81244228\|gb\|A... gi\|187428018, gi... - gi\|75176785\|ref\|ZP_00696901.1\| COG3034: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|209400375, gi... - gi\|209400375\|ref\|YP_002268852.1\| hypothetical protein ECH74115_0267 [Escherichia coli O157:H7 str. E... gi\|157156909, gi... - gi\|75189331\|ref\|ZP_00702598.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|208818968, gi... - gi\|208818968\|ref\|ZP_03259288.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|215263449, gi... - gi\|215485377\|ref\|YP_002327808.1\| hypothetical protein E2348C_0221 [Escherichia coli O127:H6 str. E23... gi\|83586305, gi\|... - gi\|83586305\|ref\|ZP_00924940.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209917436, gi... - gi\|209917436\|ref\|YP_002291520.1\| hypothetical protein ECSE_0245 [Escherichia coli SE11], gi\|20991069... gi\|191165732, gi... - gi\|75231174\|ref\|ZP_00717596.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218359597, gi... - gi\|218552829\|ref\|YP_002385742.1\| hypothetical protein ECIAI1_0264 [Escherichia coli IAI1], gi\|218359... gi\|75237315, gi\|... - gi\|75237315\|ref\|ZP_00721362.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|217324922, gi... - gi\|217324922\|ref\|ZP_03441006.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|157159707, gi... - gi\|75194445\|ref\|ZP_00704515.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218688119, gi... - gi\|218688119\|ref\|YP_002396331.1\| hypothetical protein ECED1_0258 [Escherichia coli ED1a], gi\|2184256... gi\|75211206, gi\|... - gi\|75211206\|ref\|ZP_00711313.1\| COG3034: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218557182, gi... - gi\|218557182\|ref\|YP_002390095.1\| hypothetical protein ECS88_0261 [Escherichia coli S88], gi\|21836395... gi\|117622528, gi... - gi\|117622528\|ref\|YP_851441.1\| hypothetical protein APECO1_1743 [Escherichia coli APEC O1], gi\|115511... gi\|124526886, gi... - gi\|124526886\|ref\|ZP_01698768.1\| protein of unknown function DUF949 [Escherichia coli B], gi\|12450158...	7.0E-76	[1..246]	[1..246]
gi\|24050497, gi\|... - gi\|24111717\|ref\|NP_706227.1\| hypothetical protein SF0274 [Shigella flexneri 2a str. 301], gi\|2405049... gi\|30040087, gi\|... - gi\|30061843\|ref\|NP_836014.1\| hypothetical protein S0295 [Shigella flexneri 2a str. 2457T], gi\|300400...	1.0E-75	[1..246]	[1..246]
gi\|227884755, gi... - gi\|227884755\|ref\|ZP_04002560.1\| 2-dehydro-3-deoxyphosphooctonate aldolase [Escherichia coli 83972], ... gi\|26106670, gi\|... - gi\|26246272\|ref\|NP_752311.1\| hypothetical protein c0374 [Escherichia coli CFT073], gi\|26106670\|gb\|AA...	2.0E-75	[1..246]	[1..246]
gi\|110613911, gi... - gi\|110804363\|ref\|YP_687883.1\| hypothetical protein SFV_0304 [Shigella flexneri 5 str. 8401], gi\|1106...	2.0E-75	[1..246]	[1..246]
gi\|153950202, gi... - gi\|77631859\|ref\|ZP_00794445.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|186894254, gi... - gi\|186894254\|ref\|YP_001871366.1\| hypothetical protein YPTS_0928 [Yersinia pseudotuberculosis PB1/+],... Q66E07\|Q66E07_YERPS - Putative exported protein precursor - Yersinia pseudotuberculosis gi\|51588518, gi\|... - gi\|51595236\|ref\|YP_069427.1\| hypothetical protein YPTB0886 [Yersinia pseudotuberculosis IP 32953], g...	5.0E-68	[1..237]	[1..235]
gi\|45440541, gi\|... - gi\|45440541\|ref\|NP_992080.1\| hypothetical protein YP_0691 [Yersinia pestis biovar Microtus str. 9100...	2.0E-67	[1..237]	[5..239]
gi\|167421605, gi... - gi\|167421605\|ref\|ZP_02313358.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167467189 - gi\|167467189\|ref\|ZP_02331893.1\| hypothetical protein YpesF_04645 [Yersinia pestis FV-1] gi\|149364916, gi... - gi\|149364916\|ref\|ZP_01886951.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149291329\|... gi\|89105996, gi\|... - gi\|89105996\|ref\|ZP_01178507.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108808723, gi... - gi\|108808723\|ref\|YP_652639.1\| hypothetical protein YPA_2732 [Yersinia pestis Antiqua], gi\|108780636\|... gi\|165926620, gi... - gi\|165926620\|ref\|ZP_02222452.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165989974, gi... - gi\|166010974\|ref\|ZP_02231872.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166205677, gi... - gi\|166212890\|ref\|ZP_02238925.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167398650, gi... - gi\|167398650\|ref\|ZP_02304174.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|162353027, gi... - gi\|77634928\|ref\|ZP_00797019.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|25359103 - pir\|\|AH0393 probable exported protein YPO3241 [imported] - Yersinia pestis (strain CO92) gi\|15981177, gi\|... - gi\|218930268\|ref\|YP_002348143.1\| hypothetical protein YPO3241 [Yersinia pestis CO92], gi\|16123400\|re... gi\|229838849, gi... - gi\|229838849\|ref\|ZP_04459008.1\| secreted protein [Yersinia pestis biovar Orientalis str. PEXU2], gi\|... gi\|229895999, gi... - gi\|229895999\|ref\|ZP_04511169.1\| secreted protein [Yersinia pestis Pestoides A], gi\|229700922\|gb\|EEO8... gi\|229899418, gi... - gi\|229899418\|ref\|ZP_04514561.1\| secreted protein [Yersinia pestis biovar Orientalis str. India 195],...	2.0E-67	[1..237]	[1..235]
gi\|77974387 - gi\|77974387\|ref\|ZP_00829928.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia fred...	3.0E-66	[1..238]	[1..241]
gi\|77957148 - gi\|77957148\|ref\|ZP_00821212.1\| COG3034: Uncharacterized protein conserved in bacteria [Yersinia berc...	1.0E-65	[1..245]	[1..244]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKIAFFLAM LLMPCVSFAG LLSSSSPVTP VSKEYKQQLM GSPVYIQIFK EERTLDLYVK  60
   61 MGEQYQLLDS YKICNYSGGL GPKRRQGDFK SPEGFYSVQR NQLKPDSRFY KAINIGFPNA 120
  121 YDRAHGYDGK YLMIHGACVS VGCYAMTDSG IDEIFQFVTA ALVFGQPSVQ VSIYPFRMTD 180
  181 ANMQRHKYSY YKDFWAQLKP GYDYFEQTHK PPTVSIVDGR YVVSKPLSHE VVQPQLASNY 240
  241 TLSEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1y7mA
Description:	Crystal Structure of the B. subtilis YkuD protein at 2 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits