YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|221323909
Organism: Bacillus subtilis subsp. subtilis str. SMY
Length: 190 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221323909.

Description E-value Query
Range
Subject
Range
gi|152023555, gi... - gi|89200953|ref|ZP_01179702.1| Peptidase S26B, eukaryotic signal peptidase [Bacillus cereus subsp. c...
163.0 [0..2] [186..6]

Back

Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLISNILYV IIFTLIIVLT LVVISTRSSG GEPAVFGYTL KSVLSGSMEP EFNTGSLILV  60
   61 KEITDVKELQ KGDVITFMQD ANTAVTHRIV DITKQGDHLL FKTKGDNNAA ADSAPVSDE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [120-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVRAQYTGFQ LPYAGYMLHF ASQPIGTAVL LIVPGVMLLV YAFVTISSAI REIERKTKAL  60
   61 ETDTKDSTMS T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 2a9hA
Description: NMR structural studies of a potassium channel / charybdotoxin complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle