YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|225365767, gi...
Organism:	Neisseria cinerea ATCC 14685
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|225365767, gi....

Description	E-value	Query Range	Subject Range
gi\|11280003 - pir\|\|F81840 aspartate 1-decarboxylase (EC 4.1.1.11) NMA1492 [similarity] - Neisseria meningitidis (s... PAND_NEIMA - Aspartate 1-decarboxylase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=panD... PAND_NEIMA - Aspartate 1-decarboxylase OS=Neisseria meningitidis serogroup A GN=panD PE=3 SV=1	223.0	[0..1]	[127..1]
gi\|239999141 - gi\|239999141\|ref\|ZP_04719065.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae 35/02] gi\|240013951 - gi\|240013951\|ref\|ZP_04720864.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae DGI18] gi\|240113120 - gi\|240113120\|ref\|ZP_04727610.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae MS11] gi\|240115876 - gi\|240115876\|ref\|ZP_04729938.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae PID18] PAND_NEIG1 - Aspartate 1-decarboxylase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=panD PE=3 SV=1 gi\|240016393 - gi\|240016393\|ref\|ZP_04722933.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae FA6140] gi\|240080512 - gi\|240080512\|ref\|ZP_04725055.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae FA19] gi\|240123722 - gi\|240123722\|ref\|ZP_04736678.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae PID332] gi\|240125913 - gi\|240125913\|ref\|ZP_04738799.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae SK-92-679] gi\|240118174 - gi\|240118174\|ref\|ZP_04732236.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae PID1] gi\|240121520 - gi\|240121520\|ref\|ZP_04734482.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae PID24-1] PAND_NEIG2 - Aspartate 1-decarboxylase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=panD PE=3 SV=1 gi\|240128425 - gi\|240128425\|ref\|ZP_04741086.1\| aspartate alpha-decarboxylase [Neisseria gonorrhoeae SK-93-1035] gi\|254493917, gi... - gi\|254493917\|ref\|ZP_05107088.1\| aspartate 1-decarboxylase [Neisseria gonorrhoeae 1291], gi\|226512957...	221.0	[0..1]	[127..1]
gi\|83726522, gi\|... - gi\|83746753\|ref\|ZP_00943801.1\| Aspartate 1-decarboxylase [Ralstonia solanacearum UW551], gi\|83726522...	219.0	[0..1]	[118..60]
PAND_CLOTH - Aspartate 1-decarboxylase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / ... gi\|196253302, gi... - gi\|196253302\|ref\|ZP_03151935.1\| aspartate 1-decarboxylase [Clostridium thermocellum DSM 4150], gi\|19...	216.0	[0..1]	[126..1]
PAND_BACSK - Aspartate 1-decarboxylase OS=Bacillus clausii (strain KSM-K16) GN=panD PE=3 SV=1	215.0	[0..1]	[126..1]
PAND_BACSU - Aspartate 1-decarboxylase OS=Bacillus subtilis (strain 168) GN=panD PE=3 SV=1 gi\|221314479 - gi\|221314479\|ref\|ZP_03596284.1\| aspartate alpha-decarboxylase [Bacillus subtilis subsp. subtilis str... PAND_BACSU - Aspartate 1-decarboxylase OS=Bacillus subtilis GN=panD PE=3 SV=1 gi\|221319401 - gi\|221319401\|ref\|ZP_03600695.1\| aspartate alpha-decarboxylase [Bacillus subtilis subsp. subtilis str... gi\|221323677 - gi\|221323677\|ref\|ZP_03604971.1\| aspartate alpha-decarboxylase [Bacillus subtilis subsp. subtilis str...	215.0	[0..1]	[127..1]
PAND_BACLD - Aspartate 1-decarboxylase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	214.0	[0..1]	[127..1]
PAND_PELTS - Aspartate 1-decarboxylase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=...	214.0	[0..1]	[125..1]
PAND_CARHZ - Aspartate 1-decarboxylase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2...	214.0	[0..1]	[126..1]
PAND_BACCR - Aspartate 1-decarboxylase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... PAND_BACC4 - Aspartate 1-decarboxylase OS=Bacillus cereus (strain B4264) GN=panD PE=3 SV=1	214.0	[0..1]	[127..1]

Back

Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRTMLGGKI HRATVTEADL NYVGSITVDQ DLLDAAGIYP NEKVAIVNNN NGERFETYTI  60
   61 AGKRGSGVIC LNGAAARLVQ KGDIVIIMSY VQLSEPEIAA HEPKVVLVDG NNKIRDIISY 120
  121 EPPHTVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.69897
Match:	2c45A
Description:	No description for 2c45A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits