YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194854213, gi...
Organism:	Drosophila erecta
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194854213, gi....

Description	E-value	Query Range	Subject Range
gi\|55732943\|emb\|... - hypothetical protein [Pongo pygmaeus] gi\|55732943 - gi\|55732943\|emb\|CAH93159.1\| hypothetical protein [Pongo abelii]	507.0	[0..1]	[271..1]
gi\|125985577, gi... - gi\|54644876\|gb\|EAL33616.1\| GA14356-PA [Drosophila pseudoobscura], gi\|125985577\|ref\|XP_001356552.1\| G...	496.0	[0..1]	[276..67]
CAPZB_BOVIN - F-actin-capping protein subunit beta OS=Bos taurus GN=CAPZB PE=1 SV=1	495.0	[0..2]	[271..31]
gi\|73950682 - gi\|73950682\|ref\|XP_535384.2\| PREDICTED: similar to F-actin capping protein beta subunit [Canis famil...	494.0	[0..1]	[271..9]
gi\|119615297, gi... - gi\|56417842\|emb\|CAI22230.1\| capping protein (actin filament) muscle Z-line, beta [Homo sapiens], gi\|...	493.0	[0..2]	[271..31]
gi\|61365535, gi\|... - gi\|61365535\|gb\|AAX42723.1\| capping protein muscle Z-line beta [synthetic construct], gi\|54695808\|gb\|...	492.0	[0..1]	[271..1]
gi\|148224365, gi... - gi\|148224365\|ref\|NP_001090922.1\| F-actin capping protein subunit beta 2 [Sus scrofa], gi\|118627570\|e... gi\|1079456, gi\|4... - gi\|468204\|gb\|AAA52222.1\| actin capping protein beta subunit, isoform 2, pir\|\|A54819 actin-capping pr... gi\|197129576, gi... - gi\|224080422\|ref\|XP_002192045.1\| PREDICTED: putative actin-capping protein Z beta subunit variant 1 ...	490.0	[0..1]	[271..1]
gi\|27370869, gi\|... - gi\|27370869\|gb\|AAH41233.1\| Capzb-prov protein [Xenopus laevis], gi\|148238173\|ref\|NP_001080116.1\| cap...	489.0	[0..1]	[271..1]
gi\|41053959, gi\|... - gi\|41053959\|ref\|NP_956229.1\| capping protein (actin filament) muscle Z-line, beta [Danio rerio], gi\|...	489.0	[0..1]	[273..1]

Back

Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEMQMDCAL DLMRRLPPQQ IEKNLIDLID LAPDLCEDLL SSVDQPLKIA KDKEHGKDYL  60
   61 LCDYNRDGDS YRSPWSNSYY PPLEDGQMPS ERLRKLEIEA NYAFDQYREM YYEGGVSSVY 120
  121 LWDLDHGFAA VILIKKAGDG SKMIRGCWDS IHVVEVQEKT TGRTAHYKLT STAMLWLQTN 180
  181 KQGSGTMNLG GSLTRQQEQD ANVSESSPHI ANIGKMVEEM ENKIRNTLNE IYFGKTKDIV 240
  241 NGLRSTQSLA DQRQQAAMKQ DLAAAILRRN VKPESN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	137.0
Match:	1iznB
Description:	Capz beta-1 subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
actin binding	6.56144513012007	bayes_pls_golite062009
actin filament binding	5.39928513902709	bayes_pls_golite062009
cytoskeletal protein binding	5.10504476256679	bayes_pls_golite062009
binding	2.46279312857752	bayes_pls_golite062009
protein binding	1.31870344025745	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: