YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214003249
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214003249.

Description	E-value	Query Range	Subject Range
gi\|205338236, gi... - gi\|205338236\|gb\|EDZ25000.1\| crispr-associated protein, Cse2 family [Salmonella enterica subsp. enter... gi\|194449995, gi... - gi\|194449995\|ref\|YP_002046900.1\| crispr-associated protein, Cse2 family [Salmonella enterica subsp. ... gi\|205324831, gi... - gi\|205324831\|gb\|EDZ12670.1\| crispr-associated protein, Cse2 family [Salmonella enterica subsp. enter... gi\|205328768, gi... - gi\|205328768\|gb\|EDZ15532.1\| crispr-associated protein, Cse2 family [Salmonella enterica subsp. enter... gi\|16766248, gi\|... - gi\|16766248\|ref\|NP_461863.1\| putative transposase [Salmonella typhimurium LT2], gi\|16421492\|gb\|AAL21... lcl\|NC_016856.1_... - [gene=STM14_3546] [protein=putative transposase] [protein_id=YP_005239055.1] [location=complement(31... gi\|197264093, gi... - gi\|197264093\|ref\|ZP_03164167.1\| crispr-associated protein, Cse2 family [Salmonella enterica subsp. e... gi\|200386680, gi... - gi\|200386680\|ref\|ZP_03213292.1\| crispr-associated protein, Cse2 family [Salmonella enterica subsp. e...	4.0E-57	[26..199]	[10..179]
gi\|37524748, gi\|... - gi\|37524748\|ref\|NP_928092.1\| hypothetical protein plu0747 [Photorhabdus luminescens subsp. laumondii...	6.0E-57	[20..200]	[8..185]
gi\|62129077, gi\|... - gi\|62181444\|ref\|YP_217861.1\| putative transposase [Salmonella enterica subsp. enterica serovar Chole...	4.0E-55	[26..198]	[10..178]
gi\|75235641, gi\|... - gi\|75235641\|ref\|ZP_00719815.1\| hypothetical protein EcolE1_01002625 [Escherichia coli E110019], gi\|1... gi\|191166766, gi... - gi\|75230030\|ref\|ZP_00716540.1\| hypothetical protein EcolB7_01001718 [Escherichia coli B7A], gi\|19116... gi\|218555306, gi... - gi\|218555306\|ref\|YP_002388219.1\| hypothetical protein ECIAI1_2862 [Escherichia coli IAI1], gi\|218362... gi\|157076935, gi... - gi\|75187487\|ref\|ZP_00700754.1\| hypothetical protein EcolE_01000718 [Escherichia coli E24377A], gi\|15... gi\|218696357, gi... - gi\|218696357\|ref\|YP_002404024.1\| hypothetical protein EC55989_3032 [Escherichia coli 55989], gi\|2183...	2.0E-50	[26..198]	[10..171]
gi\|75256966, gi\|... - gi\|75256966\|ref\|ZP_00728542.1\| hypothetical protein EcolE2_01003215 [Escherichia coli E22], gi\|19306...	4.0E-49	[28..198]	[12..171]
gi\|194427856, gi... - gi\|75210968\|ref\|ZP_00711092.1\| COG0464: ATPases of the AAA+ class [Escherichia coli B171], gi\|194427...	4.0E-49	[28..198]	[12..171]
gi\|168800160, gi... - gi\|189377476\|gb\|EDU95892.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str. EC... gi\|195939472 - gi\|195939472\|ref\|ZP_03084854.1\| hypothetical protein EscherichcoliO157_24178 [Escherichia coli O157:... gi\|208727672, gi... - gi\|208807871\|ref\|ZP_03250208.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str... gi\|208813548, gi... - gi\|208813548\|ref\|ZP_03254877.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str... gi\|168768853, gi... - gi\|189362007\|gb\|EDU80426.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str. EC... gi\|187769655, gi... - gi\|187769655\|gb\|EDU33499.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str. EC... gi\|254594099, gi... - gi\|254794699\|ref\|YP_003079536.1\| hypothetical protein ECSP_3707 [Escherichia coli O157:H7 str. TW143... gi\|168778744, gi... - gi\|189003223\|gb\|EDU72209.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str. EC... gi\|189372163, gi... - gi\|189372163\|gb\|EDU90579.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str. EC... gi\|188015805, gi... - gi\|188015805\|gb\|EDU53927.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str. EC... gi\|168755506, gi... - gi\|189357357\|gb\|EDU75776.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str. EC... gi\|189366865, gi... - gi\|189366865\|gb\|EDU85281.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str. EC... gi\|13363084, gi\|... - gi\|15832867\|ref\|NP_311640.1\| hypothetical protein ECs3613 [Escherichia coli O157:H7], gi\|13363084\|db... gi\|13363084, gi\|... - gi\|15832867\|ref\|NP_311640.1\| hypothetical protein ECs3613 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208818945, gi... - gi\|208818945\|ref\|ZP_03259265.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str... gi\|25372484, gi\|... - pir\|\|E91080 hypothetical protein ECs3613 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|209159369, gi... - gi\|209397969\|ref\|YP_002272223.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 st... gi\|217327743, gi... - gi\|217327743\|ref\|ZP_03443826.1\| CRISPR-associated protein, Cse2 family [Escherichia coli O157:H7 str... gi\|12517216, gi\|... - gi\|15803276\|ref\|NP_289308.1\| hypothetical protein Z4068 [Escherichia coli O157:H7 EDL933], gi\|125172...	2.0E-48	[26..198]	[10..171]
gi\|81246579, gi\|... - gi\|82545168\|ref\|YP_409115.1\| hypothetical protein SBO_2761 [Shigella boydii Sb227], gi\|81246579\|gb\|A...	5.0E-43	[28..191]	[12..164]
gi\|68184598, gi\|... - gi\|91772624\|ref\|YP_565316.1\| hypothetical protein Mbur_0595 [Methanococcoides burtonii DSM 6242], gi...	7.0E-43	[41..197]	[3..138]
gi\|23474685, gi\|... - gi\|78355910\|ref\|YP_387359.1\| hypothetical protein Dde_0863 [Desulfovibrio desulfuricans subsp. desul...	6.0E-41	[23..194]	[12..162]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNSNTAVLC RILHPDAQKA LLDWFATLSE RYERKDGKRV NGRAWRAELK RMAPPYGVMI  60
   61 CEGHDALRQA LLKHMRLQPL DEMALALFVS VAVHIKSHKE NISFAAQLGE KLKGSTSCVS 120
  121 GLRFERLQKA SDPETFCQLL IQAVKIRGTE GVNVLSLADG IFLWMEEWQR RENHQPEFRN 180
  181 PFERSRIRWA NEYLSTSRGK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.657577
Match:	PF09485.1
Description:	No description for PF09485.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits