YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|161362645, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|161362645, gi....

Description	E-value	Query Range	Subject Range
gi\|218364712, gi... - gi\|218557943\|ref\|YP_002390856.1\| DNA damage-inducible protein I [Escherichia coli S88], gi\|218364712... gi\|115512371, gi... - gi\|117623247\|ref\|YP_852160.1\| DNA damage-inducible protein I [Escherichia coli APEC O1], gi\|11551237...	2.0E-27	[1..78]	[45..124]
DINI_SERMA - DNA-damage-inducible protein I OS=Serratia marcescens GN=dinI PE=3 SV=1	7.0E-27	[1..78]	[1..78]
gi\|62127313, gi\|... - gi\|62179680\|ref\|YP_216097.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ser...	1.0E-26	[1..76]	[20..97]
gi\|237706953, gi... - gi\|237706953\|ref\|ZP_04537434.1\| DinI [Escherichia sp. 3_2_53FAA], gi\|226898163\|gb\|EEH84422.1\| DinI [... gi\|91071787, gi\|... - gi\|91210213\|ref\|YP_540199.1\| DNA damage-inducible protein I [Escherichia coli UTI89], gi\|91071787\|gb... gi\|26247201, gi\|... - gi\|26247201\|ref\|NP_753241.1\| DNA damage-inducible protein I [Escherichia coli CFT073], gi\|26107602\|g... gi\|24112472, gi\|... - ref\|NP_706982.1\| hypothetical protein SF1067 [Shigella flexneri 2a str. 301], gb\|AAN42689.1\| orf, c... gi\|110614627, gi... - gi\|110805079\|ref\|YP_688599.1\| DNA damage-inducible protein I [Shigella flexneri 5 str. 8401], gi\|110...	1.0E-26	[1..78]	[20..99]
gi\|194403080, gi... - gi\|194444417\|ref\|YP_002040222.1\| hypothetical protein SNSL254_A1058 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=STM14_1156] [protein=hypothetical protein] [protein_id=YP_005236746.1] [location=1067664..1067... gi\|194735235, gi... - gi\|194735235\|ref\|YP_002115140.1\| hypothetical protein SeSA_A2279 [Salmonella enterica subsp. enteric... gi\|169257250 - gi\|169257250\|ref\|YP_001700627.1\| bacteriophage putative DNA damage-inducible protein; DinI homolog [... gi\|169257284 - gi\|169257284\|ref\|YP_001700660.1\| bacteriophage damage-inducible protein DinI [Phage Gifsy-2] gi\|16765941, gi\|... - gi\|16765941\|ref\|NP_461556.1\| hypothetical protein STM2621 [Salmonella typhimurium LT2], gi\|16764379\|... gi\|197290611, gi... - gi\|197290611\|gb\|EDY29966.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|205341468, gi... - gi\|205341468\|gb\|EDZ28232.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... gi\|167993382, gi... - gi\|205328498\|gb\|EDZ15262.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,...	1.0E-25	[1..77]	[1..77]
gi\|194438135, gi... - gi\|83586405\|ref\|ZP_00925039.1\| hypothetical protein Ecol1_01002299 [Escherichia coli 101-1], gi\|1944... gi\|83570492, gi\|... - gi\|83570492\|ref\|ZP_00921936.1\| hypothetical protein Sdys1_01001116 [Shigella dysenteriae 1012], gi\|1... gi\|209398168, gi... - gi\|209398168\|ref\|YP_002269907.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC411... gi\|208822590, gi... - gi\|208822590\|ref\|ZP_03262909.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4042... gi\|215486270, gi... - gi\|215486270\|ref\|YP_002328701.1\| DNA damage-inducible protein I [Escherichia coli O127:H6 str. E2348... gi\|209911574, gi... - gi\|209918315\|ref\|YP_002292399.1\| DNA damage-inducible protein I [Escherichia coli SE11], gi\|20991157... gi\|218689014, gi... - gi\|218689014\|ref\|YP_002397226.1\| DNA damage-inducible protein I [Escherichia coli ED1a], gi\|21842657... gi\|217328445, gi... - gi\|217328445\|ref\|ZP_03444527.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. TW1458... gi\|218431566, gi... - gi\|218704469\|ref\|YP_002411988.1\| DNA damage-inducible protein I [Escherichia coli UMN026], gi\|218431... gi\|110342829, gi... - gi\|110641237\|ref\|YP_668967.1\| DNA damage-inducible protein I [Escherichia coli 536], gi\|110342829\|gb... gi\|15830693, gi\|... - gi\|15830693\|ref\|NP_309466.1\| DNA damage-inducible protein I [Escherichia coli O157:H7 str. Sakai], g... gi\|189375942, gi... - gi\|189375942\|gb\|EDU94358.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC508], gi... gi\|189370465, gi... - gi\|189370465\|gb\|EDU88881.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC869], gi... gi\|170080712, gi... - gi\|170080712\|ref\|YP_001730032.1\| DNA damage-inducible protein I [Escherichia coli str. K-12 substr. ... gi\|169755471, gi... - gi\|170020543\|ref\|YP_001725497.1\| DNA damage-inducible protein I [Escherichia coli ATCC 8739], gi\|169... gi\|195935450 - gi\|195935450\|ref\|ZP_03080832.1\| DNA damage-inducible protein I [Escherichia coli O157:H7 str. EC4024... gi\|170680988, gi... - gi\|170680988\|ref\|YP_001744120.1\| DNA-damage-inducible protein I [Escherichia coli SMS-3-5], gi\|17051... gi\|208815130, gi... - gi\|208815130\|ref\|ZP_03256309.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4045... gi\|208805910, gi... - gi\|208805910\|ref\|ZP_03248247.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4206... gi\|168758649, gi... - gi\|189354576\|gb\|EDU72995.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4401], g... gi\|188018052, gi... - gi\|188018052\|gb\|EDU56174.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4113], g... gi\|189363144, gi... - gi\|189363144\|gb\|EDU81563.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4486], g... gi\|189365525, gi... - gi\|189365525\|gb\|EDU83941.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4501], g... gi\|168783591, gi... - gi\|188999106\|gb\|EDU68092.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4076], g... gi\|187770368, gi... - gi\|187770368\|gb\|EDU34212.1\| DNA-damage-inducible protein I [Escherichia coli O157:H7 str. EC4196], g... DINI_ECOLI - DNA-damage-inducible protein I - Escherichia coli DINI_ECOL6 - DNA-damage-inducible protein I OS=Escherichia coli O6 GN=dinI PE=3 SV=1 gi\|15801178, gi\|... - gi\|15801178\|ref\|NP_287195.1\| DNA damage-inducible protein I [Escherichia coli O157:H7 EDL933], gi\|12... EG12670 - DNA damage-inducible protein I / Stabilizes RecA filaments; multicopy suppressor of dinD cold-sensit... EG12670 - DNA damage-inducible protein I / Stabilizes RecA filaments; multicopy suppressor of dinD cold-sensit... gi\|227886581, gi... - gi\|227886581\|ref\|ZP_04004386.1\| DNA damage-inducible protein I [Escherichia coli 83972], gi\|22783678... DINI_ECOL6 - DNA-damage-inducible protein I OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=din... gi\|56383362, gi\|... - gi\|56479811\|ref\|NP_706982.2\| DNA damage-inducible protein I [Shigella flexneri 2a str. 301], gi\|5638... gi\|229598870 - gi\|229598870\|ref\|YP_002402262.2\| DNA damage-inducible protein I [Escherichia coli 55989] gi\|1236736, gi\|8... - gi\|89107907\|ref\|AP_001687.1\| DNA damage-inducible protein I [Escherichia coli str. K-12 substr. W311... gi\|229598879 - gi\|229598879\|ref\|YP_002408065.2\| DNA damage-inducible protein I [Escherichia coli IAI39] gi\|74311623, gi\|... - gi\|74311623\|ref\|YP_310042.1\| DNA damage-inducible protein I [Shigella sonnei Ss046], gi\|73855100\|gb\|... gi\|229774942 - gi\|229774942\|ref\|YP_688599.2\| DNA damage-inducible protein I [Shigella flexneri 5 str. 8401] gi\|229775973 - gi\|229775973\|ref\|YP_852160.2\| DNA damage-inducible protein I [Escherichia coli APEC O1] gi\|238900315, gi... - gi\|238900315\|ref\|YP_002926111.1\| DNA damage-inducible protein I [Escherichia coli BW2952], gi\|238860... gi\|251784592, gi... - gi\|251784592\|ref\|YP_002998896.1\| hypothetical protein B21_01065 [Escherichia coli BL21], gi\|24237686... gi\|253977282, gi... - gi\|254287975\|ref\|YP_003053723.1\| DNA damage-inducible protein I [Escherichia coli BL21(DE3)], gi\|253... gi\|190901484, gi... - gi\|75228329\|ref\|ZP_00714979.1\| hypothetical protein EcolB7_01003339 [Escherichia coli B7A], gi\|19116... gi\|253973068, gi... - gi\|254161167\|ref\|YP_003044275.1\| DNA damage-inducible protein I [Escherichia coli B str. REL606], gi... gi\|75210334, gi\|... - gi\|75210334\|ref\|ZP_00710496.1\| hypothetical protein EcolB_01002579 [Escherichia coli B171], gi\|19442... gi\|254792443, gi... - gi\|254792443\|ref\|YP_003077280.1\| DNA damage-inducible protein I [Escherichia coli O157:H7 str. TW143... gi\|75195245, gi\|... - gi\|75195245\|ref\|ZP_00705315.1\| hypothetical protein EcolH_01001034 [Escherichia coli HS], gi\|1571605... gi\|157158610, gi... - gi\|75190119\|ref\|ZP_00703386.1\| hypothetical protein EcolE_01003413 [Escherichia coli E24377A], gi\|15... DINI_SHIFL - DNA-damage-inducible protein I OS=Shigella flexneri GN=dinI PE=3 SV=1 gi\|188493186, gi... - gi\|75513505\|ref\|ZP_00735909.1\| hypothetical protein Ecol5_01002495 [Escherichia coli 53638], gi\|1884... gi\|193064527, gi... - gi\|75257497\|ref\|ZP_00729000.1\| hypothetical protein EcolE2_01002752 [Escherichia coli E22], gi\|19306... DINI_ECO57 - DNA-damage-inducible protein I OS=Escherichia coli O157:H7 GN=dinI PE=3 SV=1 gi\|191172389, gi... - gi\|75240657\|ref\|ZP_00724574.1\| hypothetical protein EcolF_01002375 [Escherichia coli F11], gi\|191172... gi\|30040845, gi\|... - gi\|30062599\|ref\|NP_836770.1\| DNA damage-inducible protein I [Shigella flexneri 2a str. 2457T], gi\|30... gi\|193069441, gi... - gi\|75235935\|ref\|ZP_00720072.1\| hypothetical protein EcolE1_01002449 [Escherichia coli E110019], gi\|1...	5.0E-25	[1..78]	[1..80]
gi\|213427719 - gi\|213427719\|ref\|ZP_03360469.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213420268 - gi\|213420268\|ref\|ZP_03353334.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213053066 - gi\|213053066\|ref\|ZP_03345944.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213977676 - gi\|213977676\|ref\|ZP_03404935.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213864909 - gi\|213864909\|ref\|ZP_03387028.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213647667 - gi\|213647667\|ref\|ZP_03377720.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213579680 - gi\|213579680\|ref\|ZP_03361506.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|16760038 - gi\|16760038\|ref\|NP_455655.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ser... gi\|25512012, gi\|... - gi\|25512012\|pir\|\|AC0638 damage-inducible protein [imported] - Salmonella enterica subsp. enterica se... gi\|29142191, gi\|... - gi\|29142191\|ref\|NP_805533.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ser...	8.0E-25	[1..76]	[1..78]

Back

Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIELVISRT KQLPEGAVPA LEKELITRLQ NQYENCNLTI RRGSQDGLSI VGAADGDKKR  60
   61 IQSILQETWE SADDWFYAY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1ghhA
Description:	DNA damage-inducible protein DinI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits