YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166210734, gi...
Organism:	Yersinia pestis biovar Antiqua str. B42003004
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166210734, gi....

Description	E-value	Query Range	Subject Range
gi\|22126397, gi\|... - gi\|22126397\|ref\|NP_669820.1\| flagellar biosynthesis protein [Yersinia pestis KIM], gi\|21959384\|gb\|AA... gi\|89105478 - gi\|89105478\|ref\|ZP_01177997.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|45436276, gi\|... - gi\|45441415\|ref\|NP_992954.1\| flagella synthesis protein FlgN [Yersinia pestis biovar Microtus str. 9...	1.0E-32	[1..146]	[2..147]
gi\|77628868, gi\|... - gi\|77628868\|ref\|ZP_00791454.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	1.0E-31	[1..146]	[2..147]
gi\|793896, gi\|10... - gi\|793896\|emb\|CAA88189.1\| flgN [Yersinia enterocolitica], gi\|1073719\|pir\|\|S54217 flgN protein - Yers...	2.0E-31	[1..146]	[1..146]
gi\|77979942, gi\|... - gi\|77979942\|ref\|ZP_00835358.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	3.0E-30	[1..146]	[2..147]
FLGN_PROMI - Flagella synthesis protein FlgN OS=Proteus mirabilis GN=flgN PE=3 SV=1 gi\|227163785, gi... - gi\|227356008\|ref\|ZP_03840399.1\| Flagella synthesis protein flgN [Proteus mirabilis ATCC 29906], gi\|2...	1.0E-29	[1..146]	[1..146]
gi\|77975732 - gi\|77975732\|ref\|ZP_00831266.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	3.0E-29	[1..146]	[1..146]
gi\|238799101, gi... - gi\|77960289\|ref\|ZP_00824168.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	4.0E-29	[1..146]	[1..146]
gi\|505362 - gi\|505362\|dbj\|BAA04979.1\| FlgN protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi\|505362\|dbj\|BA... - FlgN protein [Salmonella typhimurium]	2.0E-28	[2..146]	[1..140]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVESLQTNLD QQLDLLESLT NVVAQEQQLL CSGRIQGWVL QGVTEQKSSI LATLAYLDQT  60
   61 RITTETTANI QAPYTRMPAL AERWQRLLQL TERLRYSNLH NGLLLQQHIE HNNQALAVLN 120
  121 TRHGQSLYGP DGQAKGANIL GRKIGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2fupA
Description:	Crystal structure of hypothetical protein PA3352 from Pseudomonas aeruginosa at 1.48 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits