YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213580007
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213580007.

Description	E-value	Query Range	Subject Range
CYSZ_ECOSM - Sulfate transporter CysZ OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cysZ PE=3 SV=1 gi\|195940541 - gi\|195940541\|ref\|ZP_03085923.1\| putative sulfate transport protein CysZ [Escherichia coli O157:H7 st... gi\|208726791, gi... - gi\|208806990\|ref\|ZP_03249327.1\| CysZ protein [Escherichia coli O157:H7 str. EC4206], gi\|208726791\|gb... gi\|208735448, gi... - gi\|208814171\|ref\|ZP_03255500.1\| CysZ protein [Escherichia coli O157:H7 str. EC4045], gi\|208735448\|gb... gi\|208740499, gi... - gi\|208820376\|ref\|ZP_03260696.1\| CysZ protein [Escherichia coli O157:H7 str. EC4042], gi\|208740499\|gb... CYSZ_ECO5E - Sulfate transporter CysZ OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cysZ PE=3 SV=1 CYSZ_ECO27 - Sulfate transporter CysZ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cysZ PE=3 SV=1 gi\|217320202, gi... - gi\|217327835\|ref\|ZP_03443918.1\| CysZ protein [Escherichia coli O157:H7 str. TW14588], gi\|217320202\|g... gi\|168759062, gi... - gi\|189354277\|gb\|EDU72696.1\| CysZ protein [Escherichia coli O157:H7 str. EC4401], gi\|168759062\|ref\|ZP... gi\|189362253, gi... - gi\|189362253\|gb\|EDU80672.1\| CysZ protein [Escherichia coli O157:H7 str. EC4486], gi\|168768502\|ref\|ZP... gi\|168778376, gi... - gi\|189003550\|gb\|EDU72536.1\| CysZ protein [Escherichia coli O157:H7 str. EC4076], gi\|168778376\|ref\|ZP... gi\|168790578, gi... - gi\|189369992\|gb\|EDU88408.1\| CysZ protein [Escherichia coli O157:H7 str. EC869], gi\|168790578\|ref\|ZP_... CYSZ_ECODH - Sulfate transporter CysZ OS=Escherichia coli (strain K12 / DH10B) GN=cysZ PE=3 SV=1 EG10003 - EI24 family inner membrane protein; putative sulfate transporter / EI24 family inner membrane protei... gi\|89109227, gi\|... - gi\|89109227\|ref\|AP_003007.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... CYSZ_ECO45 - Sulfate transporter CysZ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cysZ PE=3 SV=1 CYSZ_ECOLU - Sulfate transporter CysZ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cysZ PE=3 SV=1 gi\|188488516, gi... - gi\|75515756\|ref\|ZP_00737891.1\| COG2981: Uncharacterized protein involved in cysteine biosynthesis [E... CYSZ_ECOUT - Sulfate transporter CysZ OS=Escherichia coli (strain UTI89 / UPEC) GN=cysZ PE=3 SV=1 CYSZ_SHISS - Sulfate transporter CysZ OS=Shigella sonnei (strain Ss046) GN=cysZ PE=3 SV=1 gi\|15832539, gi\|... - gi\|15832539\|ref\|NP_311312.1\| putative sulfate transport protein CysZ [Escherichia coli O157:H7 str. ... CYSZ_ECOK1 - Sulfate transporter CysZ OS=Escherichia coli O1:K1 / APEC GN=cysZ PE=3 SV=1 CYSZ_ECOHS - Sulfate transporter CysZ OS=Escherichia coli O9:H4 (strain HS) GN=cysZ PE=3 SV=1 gi\|192955480, gi... - gi\|75233890\|ref\|ZP_00718353.1\| COG2981: Uncharacterized protein involved in cysteine biosynthesis [E... gi\|226901302, gi... - gi\|237704936\|ref\|ZP_04535417.1\| sulfate transporter [Escherichia sp. 3_2_53FAA], gi\|226901302\|gb\|EEH... gi\|194423365, gi... - gi\|83586929\|ref\|ZP_00925560.1\| COG2981: Uncharacterized protein involved in cysteine biosynthesis [E... CYSZ_ECOBW - Sulfate transporter CysZ OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=cysZ PE=3 SV=1 CYSZ_SHIB3 - Sulfate transporter CysZ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=cysZ PE=3 SV... gi\|242378020, gi... - gi\|251785747\|ref\|YP_003000051.1\| hypothetical protein B21_02274 [Escherichia coli BL21], gi\|24237802... EG10003 - EI24 family inner membrane protein; putative sulfate transporter / EI24 family inner membrane protei... gi\|253978464, gi... - gi\|254289157\|ref\|YP_003054905.1\| putative sulfate transport protein CysZ [Escherichia coli BL21(DE3)... CYSZ_ECO57 - Sulfate transporter CysZ OS=Escherichia coli O157:H7 GN=cysZ PE=3 SV=1 gi\|253974297, gi... - gi\|254162396\|ref\|YP_003045504.1\| putative sulfate transport protein CysZ [Escherichia coli B str. RE... gi\|254593767, gi... - gi\|254794367\|ref\|YP_003079204.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|12516786, gi\|... - gi\|15802946\|ref\|NP_288975.1\| putative sulfate transport protein CysZ [Escherichia coli O157:H7 EDL93... sp\|B7UGB4\|CYSZ_ECO27 - Protein CysZ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=cysZ PE=3 SV=1 CYSZ_ECOLI - Protein cysZ - Escherichia coli CYSZ_ECOLC - Sulfate transporter CysZ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cysZ PE=3 SV=...	2.0E-98	[1..253]	[1..253]
CYSZ_SHIDS - Sulfate transporter CysZ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=cysZ PE=3 SV=1	4.0E-98	[1..253]	[1..253]
CYSZ_SHIBS - Sulfate transporter CysZ OS=Shigella boydii serotype 4 (strain Sb227) GN=cysZ PE=3 SV=1 CYSZ_SHIF8 - Sulfate transporter CysZ OS=Shigella flexneri serotype 5b (strain 8401) GN=cysZ PE=3 SV=1 gi\|30063807, gi\|... - gi\|30063807\|ref\|NP_837978.1\| putative sulfate transport protein CysZ [Shigella flexneri 2a str. 2457...	4.0E-98	[1..253]	[1..253]
CYSZ_ECO24 - Sulfate transporter CysZ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cysZ PE=3 SV=1	5.0E-98	[1..253]	[1..253]
CYSZ_ECO81 - Sulfate transporter CysZ OS=Escherichia coli O81 (strain ED1a) GN=cysZ PE=3 SV=1 CYSZ_ECOL5 - Sulfate transporter CysZ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=cysZ PE=3 SV=1 CYSZ_ECOL6 - Sulfate transporter CysZ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=cysZ PE=3... CYSZ_ECOL6 - Protein CysZ OS=Escherichia coli O6 GN=cysZ PE=3 SV=1 gi\|227887459, gi... - gi\|227887459\|ref\|ZP_04005264.1\| sulfate transport protein CysZ [Escherichia coli 83972], gi\|22783580...	5.0E-98	[1..253]	[1..253]
gi\|193066725, gi... - gi\|75255084\|ref\|ZP_00726984.1\| COG2981: Uncharacterized protein involved in cysteine biosynthesis [E... gi\|194411262, gi... - gi\|75207918\|ref\|ZP_00708366.1\| COG2981: Uncharacterized protein involved in cysteine biosynthesis [E... CYSZ_ECOSE - Sulfate transporter CysZ OS=Escherichia coli (strain SE11) GN=cysZ PE=3 SV=1 CYSZ_ECO55 - Sulfate transporter CysZ OS=Escherichia coli (strain 55989 / EAEC) GN=cysZ PE=3 SV=1	6.0E-98	[1..253]	[1..253]
gi\|72442, gi\|153934 - pir\|\|BVEBCZ cysZ protein - Salmonella typhimurium, gi\|153934\|gb\|AAA27050.1\| cysZ protein gi\|153934\|gb\|AAA... - cysZ protein lcl\|NC_016856.1_... - [gene=cysZ] [protein=putative sulfate transport protein CysZ] [protein_id=YP_005238512.1] [location=...	7.0E-98	[1..253]	[38..290]
gi\|24052836, gi\|... - gi\|24113758\|ref\|NP_708268.1\| putative sulfate transport protein CysZ [Shigella flexneri 2a str. 301]... CYSZ_SHIFL - Sulfate transporter CysZ OS=Shigella flexneri GN=cysZ PE=3 SV=1	4.0E-97	[1..253]	[1..253]
CYSZ_SALTY - Sulfate transporter CysZ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=cysZ PE=... CYSZ_SALTY - Protein CysZ OS=Salmonella typhimurium GN=cysZ PE=3 SV=2 CYSZ_SALTY - Protein cysZ OS=Salmonella typhimurium GN=cysZ PE=3 SV=2	2.0E-95	[1..253]	[1..253]
gi\|62128630, gi\|... - gi\|62180997\|ref\|YP_217414.1\| putative sulfate transport protein CysZ [Salmonella enterica subsp. ent...	6.0E-95	[1..253]	[1..253]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSSSTTVPR SGVYYFSQGW KLVTLPGIRR FVILPLLVNI VLMGGAFWWL FTQLDAWIPS  60
   61 LMSHVPDWLQ WLSYLLWPIA VISVLLVFGY FFSTLANWIA APFNGLLAEQ LEARLTG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [118-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATPPDTGILG IMKDVPRIMK REWQKLAWYL PRAIVLLVLY FIPGIGQTIA PVLWFLFSAW  60
   61 MLAIQYCDYP FDNHKVPFKT MRAALRTQKV ANMQFGALTS LFTMIPVLNL FIMPVAVCGA 120
  121 TAMWVDCWRA KHALWK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits