YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166960859, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166960859, gi....

Description	E-value	Query Range	Subject Range
gi\|22125167, gi\|... - gi\|22125167\|ref\|NP_668590.1\| hypothetical protein y1267 [Yersinia pestis KIM], gi\|21958029\|gb\|AAM848... gi\|45437143, gi\|... - gi\|45442279\|ref\|NP_993818.1\| hypothetical protein YP_2496 [Yersinia pestis biovar Microtus str. 9100...	2.0E-27	[1..68]	[27..94]
gi\|16764078, gi\|... - gi\|16764078\|ref\|NP_459693.1\| putative periplasmic protein [Salmonella typhimurium LT2], gi\|16419216\|... gi\|168820167, gi... - gi\|205343190\|gb\|EDZ29954.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|194402536, gi... - gi\|194443873\|ref\|YP_002039946.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|197288308, gi... - gi\|197288308\|gb\|EDY27689.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|205347171, gi... - gi\|205347171\|gb\|EDZ33802.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161364433, gi... - gi\|161615069\|ref\|YP_001589034.1\| hypothetical protein SPAB_02829 [Salmonella enterica subsp. enteric... gi\|167992981, gi... - gi\|205328913\|gb\|EDZ15677.1\| putative periplasmic protein [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=ybfA] [protein=hypothetical protein] [protein_id=YP_005236427.1] [location=774958..775164] gi\|197261984, gi... - gi\|197261984\|ref\|ZP_03162058.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|204930010, gi... - gi\|204930010\|ref\|ZP_03221031.1\| putative periplasmic protein [Salmonella enterica subsp. enterica se... gi\|194713771, gi... - gi\|194738269\|ref\|YP_002113815.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s... gi\|197251470, gi... - gi\|197251470\|ref\|YP_002145680.1\| putative periplasmic protein [Salmonella enterica subsp. enterica s...	3.0E-26	[1..68]	[1..68]
gi\|227838411, gi... - gi\|227884325\|ref\|ZP_04002130.1\| periplasmic protein [Escherichia coli 83972], gi\|227838411\|gb\|EEJ488... gi\|218688503, gi... - gi\|218688503\|ref\|YP_002396715.1\| hypothetical protein ECED1_0678 [Escherichia coli ED1a], gi\|2184260... gi\|26246675, gi\|... - gi\|26246675\|ref\|NP_752715.1\| hypothetical protein c0785 [Escherichia coli CFT073], gi\|26107074\|gb\|AA... gi\|215263801, gi... - gi\|215485729\|ref\|YP_002328160.1\| hypothetical protein E2348C_0589 [Escherichia coli O127:H6 str. E23... gi\|218557626, gi... - gi\|218557626\|ref\|YP_002390539.1\| hypothetical protein ECS88_0734 [Escherichia coli S88], gi\|21836439... gi\|226898540, gi... - gi\|237707330\|ref\|ZP_04537811.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|91209742, gi\|... - gi\|91209742\|ref\|YP_539728.1\| hypothetical protein UTI89_C0704 [Escherichia coli UTI89], gi\|91071316\|...	5.0E-26	[1..68]	[1..68]
gi\|29138208, gi\|... - gi\|29142577\|ref\|NP_805919.1\| hypothetical protein t2168 [Salmonella enterica subsp. enterica serovar... gi\|16759650 - gi\|16759650\|ref\|NP_455267.1\| hypothetical protein STY0748 [Salmonella enterica subsp. enterica serov... gi\|56414172, gi\|... - gi\|56414172\|ref\|YP_151247.1\| hypothetical protein SPA2033 [Salmonella enterica subsp. enterica serov... gi\|224582536, gi... - gi\|224582536\|ref\|YP_002636334.1\| hypothetical protein SPC_0718 [Salmonella enterica subsp. enterica ... gi\|25513115, gi\|... - gi\|25513115\|pir\|\|AH0587 probable exported protein STY0748 [imported] - Salmonella enterica subsp. en... gi\|214001601 - gi\|214001601\|ref\|ZP_03412336.1\| hypothetical protein Salmonellentericaenterica_14532 [Salmonella ent... gi\|213418637 - gi\|213418637\|ref\|ZP_03351703.1\| hypothetical protein Salmonentericaenterica_12487 [Salmonella enteri... gi\|213163181 - gi\|213163181\|ref\|ZP_03348891.1\| hypothetical protein Salmoneentericaenterica_25403 [Salmonella enter... gi\|213022876 - gi\|213022876\|ref\|ZP_03337323.1\| hypothetical protein Salmonelentericaenterica_09758 [Salmonella ente... gi\|206707968, gi... - gi\|207856165\|ref\|YP_002242816.1\| hypothetical protein SEN0671 [Salmonella enterica subsp. enterica s... gi\|213865097 - gi\|213865097\|ref\|ZP_03387216.1\| hypothetical protein SentesT_35241 [Salmonella enterica subsp. enter... gi\|213647829 - gi\|213647829\|ref\|ZP_03377882.1\| hypothetical protein SentesTy_11429 [Salmonella enterica subsp. ente... gi\|213584006 - gi\|213584006\|ref\|ZP_03365832.1\| hypothetical protein SentesTyph_23410 [Salmonella enterica subsp. en... gi\|213428166 - gi\|213428166\|ref\|ZP_03360916.1\| hypothetical protein SentesTyphi_22880 [Salmonella enterica subsp. e... gi\|194472687, gi... - gi\|194472687\|ref\|ZP_03078671.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|195629231, gi... - gi\|195629231\|gb\|EDX48599.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168230598, gi... - gi\|205334759\|gb\|EDZ21523.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167552877, gi... - gi\|205322553\|gb\|EDZ10392.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205271766, gi... - gi\|205351985\|ref\|YP_002225786.1\| hypothetical protein SG0704 [Salmonella enterica subsp. enterica se... gi\|200390541, gi... - gi\|200390541\|ref\|ZP_03217152.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|198245007, gi... - gi\|198245007\|ref\|YP_002214690.1\| hypothetical protein SeD_A0816 [Salmonella enterica subsp. enterica... gi\|197363095, gi... - gi\|197363095\|ref\|YP_002142732.1\| hypothetical protein SSPA1894 [Salmonella enterica subsp. enterica ...	6.0E-26	[1..68]	[1..68]
gi\|110342508, gi... - gi\|110640916\|ref\|YP_668644.1\| hypothetical protein ECP_0719 [Escherichia coli 536], gi\|110342508\|gb\|... gi\|190905668, gi... - gi\|75237372\|ref\|ZP_00721414.1\| hypothetical protein EcolF_01003926 [Escherichia coli F11], gi\|191174...	2.0E-25	[1..68]	[1..68]
gi\|124529723, gi... - gi\|124529723\|ref\|ZP_01700630.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499726\|gb... gi\|82775967, gi\|... - gi\|82775967\|ref\|YP_402314.1\| hypothetical protein SDY_0635 [Shigella dysenteriae Sd197], gi\|81240115... gi\|168764942, gi... - gi\|189365152\|gb\|EDU83568.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189363444, gi... - gi\|189363444\|gb\|EDU81863.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... EG11521 - DUF2517 family protein / Predicted secreted DUF2517 family protein, function unknown gi\|188487208, gi... - gi\|75511153\|ref\|ZP_00733871.1\| hypothetical protein Ecol5_01004524 [Escherichia coli 53638], gi\|1884... gi\|187767651, gi... - gi\|187767651\|gb\|EDU31495.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|73854702, gi\|... - gi\|74311225\|ref\|YP_309644.1\| hypothetical protein SSON_0651 [Shigella sonnei Ss046], gi\|73854702\|gb\|... gi\|168779183, gi... - gi\|189003075\|gb\|EDU72061.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168786852, gi... - gi\|189373155\|gb\|EDU91571.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168802537, gi... - gi\|189375486\|gb\|EDU93902.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170020955, gi... - gi\|170020955\|ref\|YP_001725909.1\| hypothetical protein EcolC_2956 [Escherichia coli ATCC 8739], gi\|16... gi\|254591249, gi... - gi\|254791849\|ref\|YP_003076686.1\| hypothetical protein ECSP_0745 [Escherichia coli O157:H7 str. TW143... gi\|169888202, gi... - gi\|170080367\|ref\|YP_001729687.1\| hypothetical protein ECDH10B_0766 [Escherichia coli str. K-12 subst... gi\|254160768, gi... - gi\|254160768\|ref\|YP_003043876.1\| hypothetical protein ECB_00657 [Escherichia coli B str. REL606], gi... gi\|157077082, gi... - gi\|75189724\|ref\|ZP_00702991.1\| hypothetical protein EcolE_01003014 [Escherichia coli E24377A], gi\|15... gi\|254287556, gi... - gi\|254287556\|ref\|YP_003053304.1\| hypothetical protein ECD_00657 [Escherichia coli BL21(DE3)], gi\|253... gi\|157160180, gi... - gi\|75194862\|ref\|ZP_00704932.1\| hypothetical protein EcolH_01000646 [Escherichia coli HS], gi\|1571601... gi\|251784190, gi... - gi\|251784190\|ref\|YP_002998494.1\| hypothetical protein B21_00648 [Escherichia coli BL21], gi\|24237646... gi\|238862955, gi... - gi\|238899966\|ref\|YP_002925762.1\| hypothetical protein BWG_0560 [Escherichia coli BW2952], gi\|2388629... gi\|194421819, gi... - gi\|83585364\|ref\|ZP_00924011.1\| hypothetical protein Ecol1_01003451 [Escherichia coli 101-1], gi\|1944... gi\|192956056, gi... - gi\|75234517\|ref\|ZP_00718864.1\| hypothetical protein EcolE1_01003612 [Escherichia coli E110019], gi\|1... gi\|75256412, gi\|... - gi\|75256412\|ref\|ZP_00728070.1\| hypothetical protein EcolE2_01003621 [Escherichia coli E22], gi\|19306... gi\|194429066, gi... - gi\|75209731\|ref\|ZP_00709939.1\| hypothetical protein EcolB_01003143 [Escherichia coli B171], gi\|19442... gi\|168750630, gi... - gi\|188015218\|gb\|EDU53340.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|75229663, gi\|... - gi\|75229663\|ref\|ZP_00716200.1\| hypothetical protein EcolB7_01002135 [Escherichia coli B7A], gi\|19116... gi\|168757151, gi... - gi\|189355813\|gb\|EDU74232.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|218553230, gi... - gi\|218553230\|ref\|YP_002386143.1\| hypothetical protein ECIAI1_0675 [Escherichia coli IAI1], gi\|218359... gi\|218694125, gi... - gi\|218694125\|ref\|YP_002401792.1\| hypothetical protein EC55989_0683 [Escherichia coli 55989], gi\|2183... gi\|15829982, gi\|... - gi\|15829982\|ref\|NP_308755.1\| hypothetical protein ECs0728 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195939043 - gi\|195939043\|ref\|ZP_03084425.1\| hypothetical protein EscherichcoliO157_21907 [Escherichia coli O157:... gi\|110804669, gi... - gi\|110804669\|ref\|YP_688189.1\| hypothetical protein SFV_0634 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|208728380, gi... - gi\|208808579\|ref\|ZP_03250916.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208814996, gi... - gi\|208814996\|ref\|ZP_03256175.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208822847, gi... - gi\|208822847\|ref\|ZP_03263165.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209400837, gi... - gi\|209400837\|ref\|YP_002269325.1\| hypothetical protein ECH74115_0792 [Escherichia coli O157:H7 str. E... gi\|209911209, gi... - gi\|209917950\|ref\|YP_002292034.1\| hypothetical protein ECSE_0759 [Escherichia coli SE11], gi\|20991120... gi\|217325540, gi... - gi\|217325540\|ref\|ZP_03441624.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|89107558, gi\|... - gi\|89107558\|ref\|AP_001338.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... gi\|218357275, gi... - gi\|218549734\|ref\|YP_002383525.1\| hypothetical protein EFER_2411 [Escherichia fergusonii ATCC 35469],... YBFA_SHIFL - Uncharacterized protein YbfA OS=Shigella flexneri GN=ybfA PE=3 SV=1 gi\|24112022, gi\|... - gi\|24112022\|ref\|NP_706532.1\| hypothetical protein SF0597 [Shigella flexneri 2a str. 301], gi\|2405084... gi\|30040378, gi\|... - gi\|30062133\|ref\|NP_836304.1\| hypothetical protein S0608 [Shigella flexneri 2a str. 2457T], gi\|300403... YBFA_ECO57 - Uncharacterized protein YbfA OS=Escherichia coli O157:H7 GN=ybfA PE=3 SV=1 EG11521 - DUF2517 family protein / Predicted secreted DUF2517 family protein, function unknown gi\|12513605, gi\|... - gi\|15800400\|ref\|NP_286412.1\| hypothetical protein Z0846 [Escherichia coli O157:H7 EDL933], gi\|125136... YBFA_ECOLI - Hypothetical protein ybfA precursor - Escherichia coli	8.0E-25	[1..68]	[1..68]
gi\|75177449, gi\|... - gi\|75177449\|ref\|ZP_00697530.1\| hypothetical protein SboyB_01002405 [Shigella boydii BS512], gi\|18773... gi\|81244543, gi\|... - gi\|82543132\|ref\|YP_407079.1\| hypothetical protein SBO_0562 [Shigella boydii Sb227], gi\|81244543\|gb\|A...	1.0E-24	[1..68]	[1..68]
gi\|89104182 - gi\|89104182\|ref\|ZP_01176733.1\| hypothetical protein Ypesb_01001844 [Yersinia pestis biovar Orientali... gi\|77629950, gi\|... - gi\|77629950\|ref\|ZP_00792536.1\| hypothetical protein YpseI_01001301 [Yersinia pseudotuberculosis IP 3... gi\|166206210, gi... - gi\|166212279\|ref\|ZP_02238314.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. B4200... gi\|167468994 - gi\|167468994\|ref\|ZP_02333698.1\| hypothetical protein YpesF_14119 [Yersinia pestis FV-1] gi\|77634999, gi\|... - gi\|77634999\|ref\|ZP_00797089.1\| hypothetical protein YpesA_01001618 [Yersinia pestis Angola], gi\|1624... gi\|165993026, gi... - gi\|166008644\|ref\|ZP_02229542.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. E1979...	4.0E-24	[3..68]	[1..66]
gi\|77978026 - gi\|77978026\|ref\|ZP_00833461.1\| hypothetical protein YintA_01002169 [Yersinia intermedia ATCC 29909]	4.0E-24	[1..68]	[1..68]
gi\|49610809, gi\|... - gi\|50120283\|ref\|YP_049450.1\| hypothetical protein ECA1344 [Pectobacterium atrosepticum SCRI1043], gi...	9.0E-23	[1..68]	[1..68]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMYNAYPLH LVLLRRIAVV LVGVLALPVM FFRRDRARLY SYLHRIWIKT SDKPVWLTQS  60
   61 EKAGRDFY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits