YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170082908, gi...
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	412 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170082908, gi....

Description	E-value	Query Range	Subject Range
gi\|189359008, gi... - gi\|189359008\|gb\|EDU77427.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|168747135, gi... - gi\|188018292\|gb\|EDU56414.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|13363707, gi\|... - gi\|15833487\|ref\|NP_312260.1\| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai], gi\|133... gi\|209162200, gi... - gi\|209400800\|ref\|YP_002272825.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115], gi... gi\|208821093, gi... - gi\|208821093\|ref\|ZP_03261413.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|13363707, gi\|... - gi\|15833487\|ref\|NP_312260.1\| putative transport portein [Escherichia coli O157:H7], gi\|13363707\|dbj\|... gi\|209756646, gi... - pir\|\|G86003 probable transport portein hofQ [imported] - Escherichia coli (strain O157:H7, substrain... gi\|217320614, gi... - gi\|217324393\|ref\|ZP_03440477.1\| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588], gi... gi\|189380180, gi... - gi\|189380180\|gb\|EDU98596.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|12518014, gi\|... - gi\|15803894\|ref\|NP_289930.1\| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933], gi\|1251801... gi\|189374266, gi... - gi\|189374266\|gb\|EDU92682.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|208814350, gi... - gi\|208814350\|ref\|ZP_03255679.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208726906, gi... - gi\|208807105\|ref\|ZP_03249442.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|168765735, gi... - gi\|189364497\|gb\|EDU82916.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|254594705, gi... - gi\|254795305\|ref\|YP_003080142.1\| predicted fimbrial transporter [Escherichia coli O157:H7 str. TW143... gi\|189369829, gi... - gi\|189369829\|gb\|EDU88245.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168779471, gi... - gi\|189002616\|gb\|EDU71602.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|168772721, gi... - gi\|187771720\|gb\|EDU35564.1\| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196], gi\|1687...	328.0	[0..1]	[412..1]
gi\|81247157, gi\|... - gi\|82545746\|ref\|YP_409693.1\| outer membrane porin HofQ [Shigella boydii Sb227], gi\|81247157\|gb\|ABB67...	327.0	[0..1]	[412..1]
gi\|26249985, gi\|... - gi\|26249985\|ref\|NP_756025.1\| outer membrane porin HofQ [Escherichia coli CFT073], gi\|26110414\|gb\|AAN... gi\|227839400, gi... - gi\|227883521\|ref\|ZP_04001326.1\| competence protein E [Escherichia coli 83972], gi\|227839400\|gb\|EEJ49...	327.0	[0..1]	[412..1]
gi\|56383876, gi\|... - gi\|56480325\|ref\|NP_709164.2\| outer membrane porin HofQ [Shigella flexneri 2a str. 301], gi\|56383876\|... gi\|30043587, gi\|... - gi\|30065325\|ref\|NP_839496.1\| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T], gi\|3004358...	327.0	[0..1]	[412..1]
gi\|110643624, gi... - gi\|110643624\|ref\|YP_671354.1\| outer membrane porin HofQ [Escherichia coli 536], gi\|110345216\|gb\|ABG7... gi\|191171563, gi... - gi\|191171563\|ref\|ZP_03033111.1\| protein transporter HofQ [Escherichia coli F11], gi\|190908190\|gb\|EDV... gi\|215266744, gi... - gi\|215488672\|ref\|YP_002331103.1\| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69],...	326.0	[0..1]	[412..1]
gi\|115514783, gi... - gi\|117625659\|ref\|YP_858982.1\| outer membrane porin HofQ [Escherichia coli APEC O1], gi\|115514783\|gb\|... gi\|91074437, gi\|... - gi\|91212863\|ref\|YP_542849.1\| outer membrane porin HofQ [Escherichia coli UTI89], gi\|91074437\|gb\|ABE0... gi\|218367217, gi... - gi\|218560448\|ref\|YP_002393361.1\| outer membrane porin HofQ [Escherichia coli S88], gi\|218367217\|emb\|... gi\|237703118, gi... - gi\|237703118\|ref\|ZP_04533599.1\| protein transporter HofQ [Escherichia sp. 3_2_53FAA], gi\|226902382\|g...	325.0	[0..1]	[412..1]
gi\|62181990, gi\|... - gi\|62181990\|ref\|YP_218407.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar ...	315.0	[0..1]	[412..1]
gi\|16422046, gi\|... - gi\|16766776\|ref\|NP_462391.1\| outer membrane porin HofQ [Salmonella typhimurium LT2], gi\|16422046\|gb\|... lcl\|NC_016856.1_... - [gene=hofQ] [protein=outer membrane porin HofQ] [protein_id=YP_005239686.1] [location=complement(365...	315.0	[0..1]	[412..1]
gi\|29144286, gi\|... - gi\|29144286\|ref\|NP_807628.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar ... gi\|16762799 - gi\|16762799\|ref\|NP_458416.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar ... gi\|25324276, gi\|... - gi\|25324276\|pir\|\|AB1000 type II secretion system protein [imported] - Salmonella enterica subsp. ent... gi\|213852697 - gi\|213852697\|ref\|ZP_03382229.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serov... gi\|214000224 - gi\|214000224\|ref\|ZP_03410959.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serov... gi\|213053391 - gi\|213053391\|ref\|ZP_03346269.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serov... gi\|213416770 - gi\|213416770\|ref\|ZP_03349914.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serov... gi\|213426742 - gi\|213426742\|ref\|ZP_03359492.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serov... gi\|213646579 - gi\|213646579\|ref\|ZP_03376632.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serov...	314.0	[0..1]	[412..1]
gi\|56415404, gi\|... - gi\|56415404\|ref\|YP_152479.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica serovar ... gi\|197095811, gi... - gi\|197364334\|ref\|YP_002143971.1\| outer membrane porin HofQ [Salmonella enterica subsp. enterica sero...	312.0	[0..1]	[412..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQWIAALLL MLIPGVQAAK PQKVTLMVDD VPVAQVLQAL AEQEKLNLVV SPDVSGTVSL  60
   61 HLTDVPWKQA LQTVVKSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.766	N/A	N/A	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.597	N/A	N/A	d.95.2	Homing endonucleases
View	Download	0.576	N/A	N/A	d.58.7	RNA-binding domain, RBD
View	Download	0.496	N/A	N/A	d.95.2	Homing endonucleases
View	Download	0.486	N/A	N/A	d.58.11	EF-G/eEF-2 domains III and V

Predicted Domain #2

Region A:
Residues: [79-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLITRQEGNI LSVHSIAWQN NNIARQEAEQ ARAQANLPLE NRSITLQYAD AGELAKAGEK  60
   61 LLSAKGSMTV DKRTNRLLLR DNKTALSALE QWVAQMDLPV GQV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	10.387216
Match:	PF03958.8
Description:	No description for PF03958.8 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.609	0.110	protein secretion	c.30.1	PreATP-grasp domain
View	Download	0.734	0.106	protein secretion	d.58.3	Protease propeptides/inhibitors
View	Download	0.634	0.023	protein secretion	c.78.2	Aspartate/glutamate racemase
View	Download	0.617	N/A	N/A	d.237.1	Hypothetical protein YjiA, C-terminal domain
View	Download	0.610	N/A	N/A	d.58.3	Protease propeptides/inhibitors

Predicted Domain #3

Region A:
Residues: [182-412]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELSAHIVTIN EKSLRELGVK WTLADAQHAG GVGQVTTLGS DLSVATATTH VGFNIGRING  60
   61 RLLDLELSAL EQKQQLDIIA SPRLLASHLQ PASIKQGSEI PYQVSSGESG ATSVEFKEAV 120
  121 LGMEVTPTVL QKGRIRLKLH ISQNVPGQVL QQADGEVLAI DKQEIETQVE VKSGETLALG 180
  181 GIFTRKNKSG QDSVPLLGDI PWFGQLFRHD GKEDERRELV VFITPRLVSS E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits