YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208966724, gi...
Organism:	synthetic construct
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208966724, gi....

Description	E-value	Query Range	Subject Range
gi\|50729132 - gi\|50729132\|ref\|XP_416442.1\| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog; RNA ...	211.0	[0..1]	[144..191]
gi\|1515377 - gi\|1515377\|gb\|AAB06944.1\| RNA polymerase II complex component SRB7 [Homo sapiens]	190.0	[0..1]	[144..1]
tr\|M3X3Y9\|M3X3Y9... - Mediator complex subunit 21 OS=Felis catus GN=MED21 PE=4 SV=1 gi\|149714050 - gi\|149714050\|ref\|XP_001502847.1\| PREDICTED: similar to SRB7 [Equus caballus] gi\|73996918 - gi\|73996918\|ref\|XP_852318.1\| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog isofo...	190.0	[0..1]	[144..1]
MED21_MACFA - Mediator of RNA polymerase II transcription subunit 21 OS=Macaca fascicularis GN=MED21 PE=2 SV=1 CCDS8711.1_1 - null gi\|109096038 - gi\|109096038\|ref\|XP_001099368.1\| PREDICTED: similar to SRB7 suppressor of RNA polymerase B homolog [...	188.0	[0..1]	[144..1]
gi\|55726383 - gi\|55726383\|emb\|CAH89961.1\| hypothetical protein [Pongo abelii] MED21_PONAB - Mediator of RNA polymerase II transcription subunit 21 OS=Pongo abelii GN=MED21 PE=2 SV=1	188.0	[0..1]	[144..1]
MED21_MOUSE - Mediator of RNA polymerase II transcription subunit 21 OS=Mus musculus GN=Med21 PE=1 SV=1	188.0	[0..1]	[144..1]
MED21_BOVIN - Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus GN=MED21 PE=2 SV=1	187.0	[0..1]	[144..1]
gi\|149048956, gi... - gi\|27713629\|ref\|XP_232531.1\| PREDICTED: similar to SRB7 (supressor of RNA polymerase B) homolog [Rat...	187.0	[0..1]	[144..1]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADRLTQLQD AVNSLADQFC NAIGVLQQCG PPASFNNIQT AINKDQPANP TEEYAQLFAA  60
   61 LIARTAKDID VLIDSLPSEE STAALQAASL YKLEEENHEA ATCLEDVVYR GDMLLEKIQS 120
  121 ALADIAQSQL KTRSGTHSQS LPDS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	1ykeB
Description:	Structure of the mediator MED7/MED21 subcomplex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits