YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168278507
Organism:	synthetic construct
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168278507.

Description	E-value	Query Range	Subject Range
gi\|109075163 - gi\|109075163\|ref\|XP_001099172.1\| PREDICTED: methionyl aminopeptidase 1 [Macaca mulatta]	0.0	[1..386]	[79..464]
MAP1_CHICK - Methionine aminopeptidase 1 OS=Gallus gallus GN=METAP1 PE=2 SV=1	0.0	[1..385]	[1..385]
gi\|577315 - gi\|577315\|dbj\|BAA07679.1\| KIAA0094 [Homo sapiens]	0.0	[1..386]	[9..394]
gi\|55728325 - gi\|55728325\|emb\|CAH90907.1\| hypothetical protein [Pongo abelii] gi\|114595277 - gi\|114595277\|ref\|XP_517355.2\| PREDICTED: methionyl aminopeptidase 1 isoform 7 [Pan troglodytes] MAP1_PONAB - Methionine aminopeptidase 1 OS=Pongo abelii GN=METAP1 PE=2 SV=1	0.0	[1..386]	[1..386]
MAP11_MOUSE - Methionine aminopeptidase 1 OS=Mus musculus GN=Metap1 PE=1 SV=1	0.0	[1..386]	[1..386]
MAP1_BOVIN - Methionine aminopeptidase 1 OS=Bos taurus GN=METAP1 PE=2 SV=1	0.0	[1..386]	[1..386]
gi\|109467719, gi... - gi\|62644473\|ref\|XP_215717.3\| PREDICTED: similar to methionyl aminopeptidase 1 [Rattus norvegicus], g...	0.0	[1..386]	[1..386]
gi\|32484310, gi\|... - gi\|32484310\|gb\|AAH54204.1\| MGC64362 protein [Xenopus laevis], gi\|147901548\|ref\|NP_001079775.1\| hypot...	0.0	[1..383]	[1..384]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAVETRVCE TDGCSSEAKL QCPTCIKLGI QGSYFCSQEC FKGSWATHKL LHKKAKDEKA  60
   61 KREVSSWTVE GDINT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.154902
Match:	2gaiA
Description:	No description for 2gaiA was found.

Predicted Domain #2

Region A:
Residues: [76-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPWAGYRYTG KLRPHYPLMP TRPVPSYIQR PDYADHPLGM SESEQALKGT SQIKLLSSED  60
   61 IEGMRLVCRL AREVLDVAAG MIKPGVTTEE IDHAVHLACI ARNCYPSPLN YYNFPKSCCT 120
  121 SVNEVICHGI PDRRPLQEGD IVNVDITLYR NGYHGDLNET FFVGEVDDGA RKLVQTTYEC 180
  181 LMQAIDAVKP GVRYRELGNI IQKHAQANGF SVVRSYCGHG IHKLFHTAPN VPHYAKNKAV 240
  241 GVMKSGHVFT IEPMICEGGW QDETWPDGWT AVTRDGKRSA QFEHTLLVTD TGCEILTRRL 300
  301 DSARPHFMSQ F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.522879
Match:	2b3hA
Description:	Crystal structure of Human Methionine Aminopeptidase Type I with a third cobalt in the active site
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits