YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197242728, gi...
Organism:	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197242728, gi....

Description	E-value	Query Range	Subject Range
gi\|82544911, gi\|... - gi\|82544911\|ref\|YP_408858.1\| hypothetical protein SBO_2477 [Shigella boydii Sb227], gi\|81246322\|gb\|A...	156.0	[0..1]	[111..25]
gi\|15802984, gi\|... - gi\|15802984\|ref\|NP_289014.1\| hypothetical protein Z3718 [Escherichia coli O157:H7 EDL933], gi\|125168... gi\|110806395, gi... - gi\|110806395\|ref\|YP_689915.1\| hypothetical protein SFV_2506 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|157161921, gi... - gi\|157161921\|ref\|YP_001459239.1\| ethanolamine utilization protein EutS [Escherichia coli HS], gi\|157... gi\|13362794 - gi\|13362794\|dbj\|BAB36747.1\| hypothetical protein [Escherichia coli O157:H7] gi\|157079218, gi... - gi\|157157188\|ref\|YP_001463782.1\| ethanolamine utilization protein EutS [Escherichia coli E24377A], g... gi\|188487676, gi... - gi\|188492477\|ref\|ZP_02999747.1\| bacterial microcompartments protein family [Escherichia coli 53638],... gi\|209763860, gi... - pir\|\|E65021 hypothetical protein b2462 - Escherichia coli (strain K-12), pir\|\|G85888 hypothetical pr... gi\|26109235, gi\|... - gi\|26248829\|ref\|NP_754869.1\| ethanolamine utilization protein eutS [Escherichia coli CFT073], gi\|261... gi\|24052873, gi\|... - gi\|24113791\|ref\|NP_708301.1\| hypothetical protein SF2504 [Shigella flexneri 2a str. 301], gi\|2405287... gi\|49176225, gi\|... - gi\|49176225\|ref\|NP_416957.3\| putative carboxysome structural protein, ethanol utilization [Escherich... gi\|30063842, gi\|... - gi\|30063842\|ref\|NP_838013.1\| hypothetical protein S2655 [Shigella flexneri 2a str. 2457T], gi\|300420... gi\|13362794 - gi\|13362794\|dbj\|BAB36747.1\| hypothetical protein [Escherichia coli O157:H7 str. Sakai]	156.0	[0..1]	[111..25]
gi\|91211791, gi\|... - gi\|91211791\|ref\|YP_541777.1\| ethanolamine utilization protein EutS [Escherichia coli UTI89], gi\|9107... gi\|226901342, gi... - gi\|237704976\|ref\|ZP_04535457.1\| ethanolamine utilization protein EutS [Escherichia sp. 3_2_53FAA], g...	153.0	[0..1]	[111..25]
gi\|74312987, gi\|... - gi\|74312987\|ref\|YP_311406.1\| hypothetical protein SSON_2542 [Shigella sonnei Ss046], gi\|73856464\|gb\|...	152.0	[0..1]	[111..25]
gi\|191167622, gi... - gi\|75229216\|ref\|ZP_00715784.1\| COG4810: Ethanolamine utilization protein [Escherichia coli B7A], gi\|... gi\|192958375, gi... - gi\|75237795\|ref\|ZP_00721811.1\| COG4810: Ethanolamine utilization protein [Escherichia coli E110019],... gi\|75240111, gi\|... - gi\|75240111\|ref\|ZP_00724070.1\| COG4810: Ethanolamine utilization protein [Escherichia coli F11], gi\|... gi\|193064775, gi... - gi\|75257265\|ref\|ZP_00728789.1\| COG4810: Ethanolamine utilization protein [Escherichia coli E22], gi\|... gi\|75515798 - gi\|75515798\|ref\|ZP_00737933.1\| COG4810: Ethanolamine utilization protein [Escherichia coli 53638] gi\|85675413, gi\|... - gi\|89109267\|ref\|AP_003047.1\| predicted carboxysome structural protein with predicted role in ethanol... gi\|83570676, gi\|... - gi\|83570676\|ref\|ZP_00922119.1\| COG4810: Ethanolamine utilization protein [Shigella dysenteriae 1012]... gi\|194437662, gi... - gi\|83586890\|ref\|ZP_00925521.1\| COG4810: Ethanolamine utilization protein [Escherichia coli 101-1], g... gi\|75187206 - gi\|75187206\|ref\|ZP_00700473.1\| COG4810: Ethanolamine utilization protein [Escherichia coli E24377A] gi\|75196467 - gi\|75196467\|ref\|ZP_00706537.1\| COG4810: Ethanolamine utilization protein [Escherichia coli HS] gi\|194414579, gi... - gi\|75211423\|ref\|ZP_00711513.1\| COG4810: Ethanolamine utilization protein [Escherichia coli B171], gi... EUTS_SHIFL - Ethanolamine utilization protein EutS OS=Shigella flexneri GN=eutS PE=3 SV=1 gi\|38704088 - gi\|38704088\|ref\|NP_311351.2\| hypothetical protein ECs3324 [Escherichia coli O157:H7 str. Sakai] gi\|110642634, gi... - gi\|110642634\|ref\|YP_670364.1\| ethanolamine utilization protein EutS [Escherichia coli 536], gi\|11034... EUTS_ECOLI - Ethanolamine utilization protein eutS - Escherichia coli EUTS_ECOL6 - Ethanolamine utilization protein EutS OS=Escherichia coli O6 GN=eutS PE=3 SV=1 EUTS_ECOL6 - Ethanolamine utilization protein EutS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)... gi\|38704088 - gi\|38704088\|ref\|NP_311351.2\| hypothetical protein ECs3324 [Escherichia coli O157:H7] EG14192 - putative ethanol utilization carboxysome structural protein / Ethanolamine catabolic microcompartme... gi\|189368361, gi... - gi\|189368361\|gb\|EDU86777.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|168756224, gi... - gi\|189356558\|gb\|EDU74977.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|227835848, gi... - gi\|227887498\|ref\|ZP_04005303.1\| ethanolamine utilization protein EutS [Escherichia coli 83972], gi\|2... gi\|187770694, gi... - gi\|187770694\|gb\|EDU34538.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|238901625, gi... - gi\|238901625\|ref\|YP_002927421.1\| putative carboxysome structural protein with putative role in ethan... gi\|168768544, gi... - gi\|189362229\|gb\|EDU80648.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|251785788, gi... - gi\|251785788\|ref\|YP_003000092.1\| hypothetical protein B21_02315 [Escherichia coli BL21], gi\|24237806... gi\|253772647, gi... - gi\|254289197\|ref\|YP_003054945.1\| predicted carboxysome structural protein with predicted role in eth... gi\|168787798, gi... - gi\|189372251\|gb\|EDU90667.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC8... gi\|253974337, gi... - gi\|254162436\|ref\|YP_003045544.1\| predicted carboxysome structural protein with predicted role in eth... gi\|168778418, gi... - gi\|189003156\|gb\|EDU72142.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|169754182, gi... - gi\|170019254\|ref\|YP_001724208.1\| microcompartments protein [Escherichia coli ATCC 8739], gi\|16975418... gi\|254794406, gi... - gi\|254794406\|ref\|YP_003079243.1\| predicted carboxysome structural protein with predicted role in eth... gi\|189378595, gi... - gi\|189378595\|gb\|EDU97011.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC5... gi\|188017045, gi... - gi\|188017045\|gb\|EDU55167.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str. EC4... gi\|218548105, gi... - gi\|218548105\|ref\|YP_002381896.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|217319239, gi... - gi\|217326872\|ref\|ZP_03442955.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str.... gi\|218428152, gi... - gi\|218690588\|ref\|YP_002398800.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|218554985, gi... - gi\|218554985\|ref\|YP_002387898.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|218370904, gi... - gi\|218700918\|ref\|YP_002408547.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|218352820, gi... - gi\|218696088\|ref\|YP_002403755.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|170684283, gi... - gi\|170684283\|ref\|YP_001744644.1\| ethanolamine utilization protein EutS [Escherichia coli SMS-3-5], g... gi\|170082071, gi... - gi\|170082071\|ref\|YP_001731391.1\| carboxysome structural protein with role in ethanol utilization [Es... gi\|208727000, gi... - gi\|208807199\|ref\|ZP_03249536.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str.... gi\|195936603 - gi\|195936603\|ref\|ZP_03081985.1\| hypothetical protein EscherichcoliO157_09105 [Escherichia coli O157:... gi\|208821425, gi... - gi\|208821425\|ref\|ZP_03261745.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str.... gi\|124499634, gi... - gi\|124529774\|ref\|ZP_01700651.1\| microcompartments protein [Escherichia coli B], gi\|124499634\|gb\|EAY4... gi\|208734585, gi... - gi\|208813308\|ref\|ZP_03254637.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str.... EG14192 - putative ethanol utilization carboxysome structural protein / Ethanolamine catabolic microcompartme... gi\|215265835, gi... - gi\|215487763\|ref\|YP_002330194.1\| predicted carboxysome structural protein with predicted role in eth... gi\|209397456, gi... - gi\|209397456\|ref\|YP_002271930.1\| ethanolamine utilization protein EutS [Escherichia coli O157:H7 str...	149.0	[0..1]	[111..1]
gi\|16761387 - gi\|16761387\|ref\|NP_457004.1\| putative ethanolamine utilization protein EutS [Salmonella enterica sub... EUTS_SALTI - Ethanolamine utilization protein EutS OS=Salmonella typhi GN=eutS PE=3 SV=1 EUTS_SALTI - Ethanolamine utilization protein eutS OS=Salmonella typhi GN=eutS PE=3 SV=1	147.0	[0..1]	[111..1]
gi\|47091944, gi\|... - gi\|47091944\|ref\|ZP_00229738.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 4b ... gi\|254823602 - gi\|254823602\|ref\|ZP_05228603.1\| PduU protein [Listeria monocytogenes FSL J1-194] gi\|25341011, gi\|... - pir\|\|AC1571 Salmonelle enterica PduU protein homolog lin1108 [imported] - Listeria innocua (strain C... gi\|225876207, gi... - gi\|226223745\|ref\|YP_002757852.1\| PduU protein [Listeria monocytogenes Clip81459], gi\|225876207\|emb\|C... gi\|133727578, gi... - gi\|153166472\|ref\|ZP_01927042.1\| propanediol utilization protein PduU [Listeria monocytogenes FSL N1-... gi\|46907361, gi\|... - gi\|46907361\|ref\|YP_013750.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 4b F2... gi\|254932976, gi... - gi\|254932976\|ref\|ZP_05266335.1\| PduU protein [Listeria monocytogenes HPB2262], gi\|153201854\|ref\|ZP_0... gi\|16800177 - gi\|16800177\|ref\|NP_470445.1\| hypothetical protein lin1108 [Listeria innocua Clip11262] gi\|255521697 - gi\|255521697\|ref\|ZP_05388934.1\| PduU protein [Listeria monocytogenes FSL J1-175] gi\|254993049 - gi\|254993049\|ref\|ZP_05275239.1\| PduU protein [Listeria monocytogenes FSL J2-064] gi\|254878482 - gi\|254878482\|ref\|ZP_05251192.1\| PduU protein [Listeria monocytogenes FSL J2-071] gi\|254852984 - gi\|254852984\|ref\|ZP_05242332.1\| PduU protein [Listeria monocytogenes FSL R2-503]	147.0	[0..2]	[111..6]
gi\|153174212, gi... - gi\|254828503\|ref\|ZP_05233190.1\| hypothetical protein LmonocytogeFSL_08589 [Listeria monocytogenes FS... gi\|153179234, gi... - gi\|254936141\|ref\|ZP_05267838.1\| hypothetical protein LmonF6_03390 [Listeria monocytogenes F6900], gi... gi\|255026162 - gi\|255026162\|ref\|ZP_05298148.1\| hypothetical protein LmonocytFSL_07070 [Listeria monocytogenes FSL J... gi\|47016603, gi\|... - gi\|47094985\|ref\|ZP_00232598.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 1/2... gi\|16803184 - gi\|16803184\|ref\|NP_464669.1\| hypothetical protein lmo1144 [Listeria monocytogenes EGD-e] gi\|224500758 - gi\|224500758\|ref\|ZP_03669107.1\| hypothetical protein LmonF1_14226 [Listeria monocytogenes Finland 19... gi\|224502560 - gi\|224502560\|ref\|ZP_03670867.1\| hypothetical protein LmonFR_08574 [Listeria monocytogenes FSL R2-561... gi\|16410560, gi\|... - pir\|\|AH1217 Salmonelle enterica PduU protein homolog lmo1144 [imported] - Listeria monocytogenes (st... gi\|153184693, gi... - gi\|254898695\|ref\|ZP_05258619.1\| hypothetical protein LmonJ_02730 [Listeria monocytogenes J0161], gi\|... gi\|153195920, gi... - gi\|254830102\|ref\|ZP_05234757.1\| hypothetical protein Lmon1_02035 [Listeria monocytogenes 10403S], gi... gi\|254911816, gi... - gi\|254911816\|ref\|ZP_05261828.1\| hypothetical protein LmonJ2_03390 [Listeria monocytogenes J2818], gi...	147.0	[0..2]	[111..6]
gi\|218559397, gi... - gi\|218559397\|ref\|YP_002392310.1\| putative carboxysome-like ethanolaminosome structural protein with ... gi\|115513782, gi... - gi\|117624658\|ref\|YP_853571.1\| ethanolamine utilization protein EutS [Escherichia coli APEC O1], gi\|1...	146.0	[0..1]	[111..1]
gi\|126699518, gi... - gi\|126699518\|ref\|YP_001088415.1\| putative ethanolamine/propanediol utilization protein [Clostridium ... gi\|255306898 - gi\|255306898\|ref\|ZP_05351069.1\| putative ethanolamine/propanediol utilization protein [Clostridium d... gi\|255101034 - gi\|255101034\|ref\|ZP_05330011.1\| putative ethanolamine/propanediol utilization protein [Clostridium d...	144.0	[0..2]	[111..5]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKERIIQEF VPGKQVTLAH LIAHPGEELA KKIGVPDAGA IGIMTLTPGE TAMIAGDLAM  60
   61 KAADVHIGFL DRFSGALVIY GTVGAVEEAL LQTVSGLGRL LNFTLCELTK S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.69897
Match:	2a10A
Description:	carboxysome shell protein ccmK4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits