YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218890699, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218890699, gi....

Description	E-value	Query Range	Subject Range
gi\|115586318, gi... - gi\|116051097\|ref\|YP_790072.1\| general secretion pathway protein G [Pseudomonas aeruginosa UCBPP-PA14...	1.0E-44	[1..148]	[1..148]
gi\|49075912 - gi\|49075912\|gb\|AAT49508.1\| PA3101 [synthetic construct]	3.0E-44	[1..148]	[1..148]
gi\|34499266, gi\|... - gi\|34499266\|ref\|NP_903481.1\| general secretion pathway protein G [Chromobacterium violaceum ATCC 124...	6.0E-44	[4..148]	[1..145]
gi\|78701109, gi\|... - gi\|78701109\|ref\|ZP_00865562.1\| General secretion pathway protein G [Alkalilimnicola ehrlichei MLHE-1...	8.0E-44	[6..146]	[1..141]
gi\|68531143, gi\|... - gi\|94312315\|ref\|YP_585525.1\| general secretion pathway protein G [Ralstonia metallidurans CH34], gi\|...	2.0E-43	[4..147]	[11..154]
gi\|107102650 - gi\|107102650\|ref\|ZP_01366568.1\| hypothetical protein PaerPA_01003715 [Pseudomonas aeruginosa PACS2] gi\|152987087, gi... - gi\|94412709\|ref\|ZP_01292615.1\| hypothetical protein PaerP_01005501 [Pseudomonas aeruginosa PA7], gi\|... GSPG_PSEAE - General secretion pathway protein G OS=Pseudomonas aeruginosa GN=xcpT PE=1 SV=1 gi\|84326182 - gi\|84326182\|ref\|ZP_00974211.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Pseudomonas aer... gi\|84320100 - gi\|84320100\|ref\|ZP_00968485.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Pseudomonas aer... GSPG_PSEAE - Type II secretion system protein G OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 10...	6.0E-43	[7..148]	[1..142]
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	1.0E-42	[10..147]	[17..154]
gi\|151467 - gi\|151467\|gb\|AAA25946.1\| PilD-dependent protein	1.0E-42	[7..148]	[1..142]
gi\|54310531, gi\|... - gi\|54310531\|ref\|YP_131551.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...	3.0E-42	[9..147]	[13..151]
gi\|90324230, gi\|... - gi\|90414688\|ref\|ZP_01222659.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium ...	4.0E-42	[9..147]	[2..140]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQSRPLQRR QQSGFTLIEI MVVVVILGIL AALVVPQVMS RPDQAKVTVA KGDIKAIAAA  60
   61 LDMYKLDNFA YPSTQQGLEA LVKKPTGNPQ PKNWNKDGYL KKLPVDPWGN PYQYLAPGTK 120
  121 GPFDLYSLGA DGKEGGSDND ADIGNWDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1t92A
Description:	Crystal structure of N-terminal truncated pseudopilin PulG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	8.7545256796234	bayes_pls_golite062009
transporter activity	2.74044424168852	bayes_pls_golite062009
substrate-specific transporter activity	2.55698329173896	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: