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View Structure Prediction Details

Protein: gi|167773407
Organism: synthetic construct
Length: 676 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167773407.

Description E-value Query
Range
Subject
Range
gi|74181406, gi|... - gi|74220156|dbj|BAE31265.1| unnamed protein product [Mus musculus], gi|74212538|dbj|BAE31009.1| unna...
0.0 [1..676] [1..676]
gi|109508259, gi... - gi|109509029|ref|XP_001079503.1| PREDICTED: similar to Protein FKSG26 [Rattus norvegicus], gi|109508...
0.0 [1..662] [1..663]
gi|109129525 - gi|109129525|ref|XP_001090795.1| PREDICTED: similar to NULP1 isoform 3 [Macaca mulatta]
0.0 [1..676] [1..676]
gi|73956789 - gi|73956789|ref|XP_849916.1| PREDICTED: similar to FKSG26 protein isoform 1 [Canis familiaris]
0.0 [1..676] [1..677]
gi|114664216 - gi|114664216|ref|XP_511180.2| PREDICTED: NULP1 [Pan troglodytes]
0.0 [58..676] [15..632]

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Predicted Domain #1
Region A:
Residues: [1-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRALRRLR GEQRGQEPLG PGALHFDLRD DDDAEEEGPK RELGVRRPGG AGKEGVRVNN  60
   61 RFELINIDDL EDDPVVNGER SGCALTDAVA PGNKGRGQRG NTESKTDGDD TETVPSEQSH 120
  121 ASGKLRKKKK KQKNKKSSTG EASENGLEDI DRILERIEDS TGLNRPGPAP LSSR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [175-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KHVLYVEHRH LNPDTELKRY FGARAILGEQ RPRQRQRVYP KCTWLTTPKS TWPRYSKPGL  60
   61 SMRLLESKKG LSFFAFEHSE EYQQAQHKFL VAVESMEPNN IVVLLQTSPY HVDSLLQLSD 120
  121 ACRFQEDQEM ARDLVERALY SMECAFHPLF SLTSGACRLD YRRPENRSFY LALYKQMSFL 180
  181 EKRGCPRTAL EYCKLILSLE PDEDPLCMLL LIDHLALRAR NYEYLIRLF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.02
Match: 2r5sA
Description: No description for 2r5sA was found.

Predicted Domain #3
Region A:
Residues: [404-505]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEWEAHRNLS QLPNFAFSVP LAYFLLSQQT DLPECEQSSA RQKASLLIQQ ALTMFPGVLL  60
   61 PLLESCSVRP DASVSSHRFF GPNAEISQPP ALSQLVNLYL GR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [506-676]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHFLWKEPAT MSWLEENVHE VLQAVDAGDP AVEACENRRK VLYQRAPRNI HRHVILSEIK  60
   61 EAVAALPPDV TTQSVMGFDP LPPSDTIYSY VRPERLSPIS HGNTIALFFR SLLPNYTMEG 120
  121 ERPEEGVAGG LNRNQGLNRL MLAVRDMMAN FHLNDLEAPH EDDAEGEGEW D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle