YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167774171
Organism:	synthetic construct
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167774171.

Description	E-value	Query Range	Subject Range
gi\|114581110, gi... - gi\|114581112\|ref\|XP_001159493.1\| PREDICTED: origin recognition complex subunit 4 isoform 8 [Pan trog...	2.0E-65	[1..436]	[1..436]
ORC4_PONAB - Origin recognition complex subunit 4 OS=Pongo abelii GN=ORC4 PE=2 SV=1 gi\|55731503 - gi\|55731503\|emb\|CAH92463.1\| hypothetical protein [Pongo abelii]	5.0E-65	[1..436]	[1..436]
ORC4L - origin recognition complex, subunit 4-like (yeast)	1.0E-64	[1..436]	[1..436]
ORC4_RAT - Origin recognition complex subunit 4 OS=Rattus norvegicus GN=Orc4 PE=2 SV=1	9.0E-63	[1..436]	[1..434]
gi\|73984365 - gi\|73984365\|ref\|XP_533348.2\| PREDICTED: similar to origin recognition complex subunit 4 [Canis famil...	2.0E-62	[1..436]	[1..436]
ORC4_CRIGR - Origin recognition complex subunit 4 OS=Cricetulus griseus GN=ORC4 PE=2 SV=1	3.0E-62	[1..436]	[1..436]
ORC4_MOUSE - Origin recognition complex subunit 4 OS=Mus musculus GN=Orc4 PE=1 SV=2	8.0E-62	[1..436]	[1..433]
ORC4_BOVIN - Origin recognition complex subunit 4 OS=Bos taurus GN=ORC4 PE=2 SV=1	1.0E-61	[1..436]	[1..436]

Back

Predicted Domain #1

Region A:
Residues: [1-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRKSKSNS LIHTECLSQV QRILRERFCR QSPHSNLFGV QVQYKHLSEL LKRTALHGES  60
   61 NSVLIIGPRG SGKTMLINHA LKELMEIEEV SENVLQVHLN GLLQINDKIA LKEITRQLNL 120
  121 ENVVGDKVFG SFAENLSFLL EALKKGDRTS SCPVIFILDE FDLFAHHKNQ TLLYNLFDIS 180
  181 QSAQTPIAVI GLTCRLDILE LLEKRVKSRF SHRQIHLMNS FGFPQYVKIF KEQLSLPAEF 240
  241 PDKVFAEKWN ENVQYLSEDR SVQEVLQKHF NISKNLRSLH MLLMLALNRV TASHPFMTAV 300
  301 DLMEASQLCS MDSKANIVHG LSVLEICLII AMKHLNDIYE EEPFNFQMVY NEFQKFVQRK 360
  361 AHSVYNFEKP VVMKAFEHLQ QLELIKPMER TSGNSQREYQ LMKLLLDNTQ IMNALQKYPN 420
  421 CPTDVRQWAT SSLSWL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits