YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213162968
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213162968.

Description	E-value	Query Range	Subject Range
gi\|82776812, gi\|... - gi\|82776812\|ref\|YP_403161.1\| periplasmic protein [Shigella dysenteriae Sd197], gi\|81240960\|gb\|ABB616...	1.0E-28	[1..161]	[1..161]
gi\|37528606, gi\|... - gi\|37528606\|ref\|NP_931951.1\| periplasmic protein precursor [Photorhabdus luminescens subsp. laumondi...	2.0E-27	[1..150]	[1..163]
gi\|254161802, gi... - gi\|254161802\|ref\|YP_003044910.1\| envelope stress induced periplasmic protein [Escherichia coli B str... SPY_ECOBD - Periplasmic chaperone Spy OS=Escherichia coli (strain B / BL21-DE3) GN=spy PE=1 SV=1 gi\|194438564, gi... - gi\|83586042\|ref\|ZP_00924680.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|242377464, gi... - gi\|251785191\|ref\|YP_002999495.1\| hypothetical protein B21_01700 [Escherichia coli BL21], gi\|24237746...	6.0E-25	[1..161]	[1..161]
gi\|188488758, gi... - gi\|75513761\|ref\|ZP_00736137.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|89108582, gi\|... - gi\|89108582\|ref\|AP_002362.1\| envelope stress induced periplasmic protein [Escherichia coli str. K-12... gi\|157161203, gi... - gi\|75195813\|ref\|ZP_00705883.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|169889235, gi... - gi\|170081400\|ref\|YP_001730720.1\| envelope stress induced periplasmic protein [Escherichia coli str. ... gi\|238900957, gi... - gi\|238900957\|ref\|YP_002926753.1\| envelope stress induced periplasmic protein [Escherichia coli BW295... SPY_ECOLI - Spheroplast protein Y precursor - Escherichia coli EG13490 - periplasmic ATP-independent protein refolding chaperone, stress-induced / Periplasmic ATP-independen... EG13490 - periplasmic ATP-independent protein refolding chaperone, stress-induced / Periplasmic ATP-independen...	2.0E-24	[1..161]	[1..161]
gi\|117623915, gi... - gi\|117623915\|ref\|YP_852828.1\| periplasmic protein [Escherichia coli APEC O1], gi\|115513039\|gb\|ABJ011... gi\|91210959, gi\|... - gi\|91210959\|ref\|YP_540945.1\| periplasmic protein [Escherichia coli UTI89], gi\|91072533\|gb\|ABE07414.1... gi\|218558611, gi... - gi\|218558611\|ref\|YP_002391524.1\| periplasmic protein [Escherichia coli S88], gi\|218365380\|emb\|CAR031... gi\|237705693, gi... - gi\|237705693\|ref\|ZP_04536174.1\| spheroplast protein Y [Escherichia sp. 3_2_53FAA], gi\|226900450\|gb\|E...	3.0E-24	[1..161]	[1..161]
gi\|194433460, gi... - gi\|83569653\|ref\|ZP_00921104.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|157158229, gi... - gi\|75190776\|ref\|ZP_00704043.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|194428505, gi... - gi\|75210230\|ref\|ZP_00710398.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|190900391, gi... - gi\|75227070\|ref\|ZP_00713894.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|193068938, gi... - gi\|75236788\|ref\|ZP_00720859.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|193065814, gi... - gi\|75256145\|ref\|ZP_00727841.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|168749439, gi... - gi\|188016249\|gb\|EDU54371.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4113], gi\|1687494... gi\|168756748, gi... - gi\|189356145\|gb\|EDU74564.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4401], gi\|1687567... SPY_ECO57 - Periplasmic chaperone Spy OS=Escherichia coli O157:H7 GN=spy PE=1 SV=1 gi\|168762189, gi... - gi\|189367468\|gb\|EDU85884.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4501], gi\|1687621... gi\|25380130, gi\|... - pir\|\|E85783 hypothetical protein spy [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|189360598, gi... - gi\|189360598\|gb\|EDU79017.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4486], gi\|1687705... gi\|12515762, gi\|... - gi\|15802154\|ref\|NP_288176.1\| periplasmic protein [Escherichia coli O157:H7 EDL933], gi\|12515762\|gb\|A... gi\|209161296, gi... - gi\|209399896\|ref\|YP_002270812.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|209919104, gi... - gi\|209919104\|ref\|YP_002293188.1\| periplasmic protein [Escherichia coli SE11], gi\|209912363\|dbj\|BAG77... gi\|217328829, gi... - gi\|217328829\|ref\|ZP_03444910.1\| spheroplast protein Y [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|254793361, gi... - gi\|254793361\|ref\|YP_003078198.1\| envelope stress induced periplasmic protein [Escherichia coli O157:... gi\|218361077, gi... - gi\|218554309\|ref\|YP_002387222.1\| periplasmic protein [Escherichia coli IAI1], gi\|218361077\|emb\|CAQ98... gi\|218369676, gi... - gi\|218699690\|ref\|YP_002407319.1\| periplasmic protein [Escherichia coli IAI39], gi\|218369676\|emb\|CAR1... gi\|218432338, gi... - gi\|218705241\|ref\|YP_002412760.1\| periplasmic protein [Escherichia coli UMN026], gi\|218432338\|emb\|CAR... gi\|124529977, gi... - gi\|124529977\|ref\|ZP_01700789.1\| protein of unknown function, Spy-related [Escherichia coli B], gi\|12... gi\|187769494, gi... - gi\|187769494\|gb\|EDU33338.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4196], gi\|1687749... gi\|189000278, gi... - gi\|189000278\|gb\|EDU69264.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4076], gi\|1687821... gi\|189371992, gi... - gi\|189371992\|gb\|EDU90408.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC869], gi\|16878814... gi\|189377578, gi... - gi\|189377578\|gb\|EDU95994.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC508], gi\|16880007... gi\|169754838, gi... - gi\|170019910\|ref\|YP_001724864.1\| periplasmic protein [Escherichia coli ATCC 8739], gi\|169754838\|gb\|A... gi\|195937427 - gi\|195937427\|ref\|ZP_03082809.1\| periplasmic protein [Escherichia coli O157:H7 str. EC4024] gi\|208810309, gi... - gi\|208810309\|ref\|ZP_03252185.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|208816818, gi... - gi\|208816818\|ref\|ZP_03257938.1\| spheroplast protein Y [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|15831703, gi\|... - gi\|15831703\|ref\|NP_310476.1\| periplasmic protein [Escherichia coli O157:H7 str. Sakai], gi\|13361916\|...	3.0E-24	[1..161]	[1..161]
gi\|24051797, gi\|... - gi\|24112858\|ref\|NP_707368.1\| periplasmic protein [Shigella flexneri 2a str. 301], gi\|24051797\|gb\|AAN... gi\|110805449, gi... - gi\|110805449\|ref\|YP_688969.1\| periplasmic protein [Shigella flexneri 5 str. 8401], gi\|110614997\|gb\|A... gi\|30062990, gi\|... - gi\|30062990\|ref\|NP_837161.1\| periplasmic protein [Shigella flexneri 2a str. 2457T], gi\|30041239\|gb\|A...	5.0E-24	[1..161]	[1..161]
gi\|215265032, gi... - gi\|215486960\|ref\|YP_002329391.1\| periplasmic protein [Escherichia coli O127:H6 str. E2348/69], gi\|21... gi\|218427248, gi... - gi\|218689684\|ref\|YP_002397896.1\| periplasmic protein [Escherichia coli ED1a], gi\|218427248\|emb\|CAR08... gi\|110641863, gi... - gi\|110641863\|ref\|YP_669593.1\| periplasmic protein [Escherichia coli 536], gi\|110343455\|gb\|ABG69692.1... gi\|227885832, gi... - gi\|227885832\|ref\|ZP_04003637.1\| periplasmic protein [Escherichia coli 83972], gi\|227837405\|gb\|EEJ478... gi\|191171743, gi... - gi\|75241382\|ref\|ZP_00725233.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito... gi\|26108400, gi\|... - gi\|26247997\|ref\|NP_754037.1\| periplasmic protein [Escherichia coli CFT073], gi\|26108400\|gb\|AAN80602....	5.0E-24	[1..161]	[1..161]
gi\|75176701 - gi\|75176701\|ref\|ZP_00696829.1\| COG3678: P pilus assembly/Cpx signaling pathway, periplasmic inhibito...	2.0E-23	[1..157]	[2..156]
gi\|224468703, gi... - gi\|224584176\|ref\|YP_002637974.1\| hypothetical protein SPC_2422 [Salmonella enterica subsp. enterica ... gi\|200390420, gi... - gi\|200390420\|ref\|ZP_03217031.1\| spheroplast protein Y [Salmonella enterica subsp. enterica serovar V... gi\|197938748, gi... - gi\|198244232\|ref\|YP_002215817.1\| spheroplast protein Y [Salmonella enterica subsp. enterica serovar ... gi\|197094106, gi... - gi\|197362629\|ref\|YP_002142266.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Pa... gi\|197215370, gi... - gi\|197251667\|ref\|YP_002146728.1\| spheroplast protein Y [Salmonella enterica subsp. enterica serovar ... gi\|195634283, gi... - gi\|195634283\|gb\|EDX52635.1\| spheroplast protein Y [Salmonella enterica subsp. enterica serovar Newpo... gi\|168263875, gi... - gi\|205347529\|gb\|EDZ34160.1\| spheroplast protein Y [Salmonella enterica subsp. enterica serovar Hadar... gi\|62127532, gi\|... - gi\|62179899\|ref\|YP_216316.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Choler... gi\|238910874 - gi\|238910874\|ref\|ZP_04654711.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Ten... gi\|56127963, gi\|... - gi\|56413706\|ref\|YP_150781.1\| periplasmic protein [Salmonella enterica subsp. enterica serovar Paraty...	2.0E-23	[1..161]	[1..161]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLTALFVA STLAMGAANL AHAAETTTAA PADAKPMMQH KGKFGPHHDM MFKNLNLTDA  60
   61 QKQQIRDIIK AQREQMERPL LEERRAMHDI IASDTFDKAK AEAQITKMEA QRKANMLAHM 120
  121 ETQNKIYNVL TPEQKKQYNA NFEKRLTERP AQEGKMPAAA E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.762	a.24.1	Apolipoprotein
View	Download	0.665	a.47.2	t-snare proteins
View	Download	0.640	a.24.9	alpha-catenin/vinculin
View	Download	0.637	a.47.2	t-snare proteins
View	Download	0.592	d.110.4	SNARE-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits