YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190690369, gi...
Organism:	synthetic construct
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190690369, gi....

Description	E-value	Query Range	Subject Range
gi\|62865879 - gi\|62865879\|ref\|NP_001015509.1\| Bcl-2 inhibitor of transcription isoform a [Homo sapiens] gi\|55646669 - gi\|55646669\|ref\|XP_511921.1\| PREDICTED: similar to Peptidyl-tRNA hydrolase 2, mitochondrial precurso...	2.0E-74	[1..179]	[2..180]
gi\|62078455, gi\|... - gi\|62078455\|ref\|NP_001013882.1\| Bcl-2 inhibitor of transcription [Rattus norvegicus], gi\|54035568\|gb...	2.0E-73	[1..179]	[1..181]
gi\|109114555, gi... - gi\|109114555\|ref\|XP_001109316.1\| PREDICTED: similar to Bcl-2 inhibitor of transcription isoform a is...	4.0E-73	[1..179]	[1..179]
PTH2_MOUSE - Peptidyl-tRNA hydrolase 2, mitochondrial OS=Mus musculus GN=Ptrh2 PE=1 SV=1	2.0E-72	[1..179]	[1..181]
PTH2_BOVIN - Peptidyl-tRNA hydrolase 2, mitochondrial OS=Bos taurus GN=PTRH2 PE=2 SV=1	7.0E-70	[1..179]	[1..179]
gi\|62860262 - gi\|62860262\|ref\|NP_001016657.1\| hypothetical protein LOC549411 [Xenopus (Silurana) tropicalis]	5.0E-62	[8..179]	[1..171]

Back

Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKSLVMEY LAHPSTLGLA VGVACGMCLG WSLRVCFGML PKSKTSKTHT DTESEASILG  60
   61 DSGEYKMILV VRNDLKMGKG KVAAQCSHAA VSAYKQIQRR NPEMLKQWEY CGQPKVVVKA 120
  121 PDEETLIALL AHAKMLGLTV SLIQDAGRTQ IAPGSQTVLG IGPGPADLID KVTGHLKLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	1q7sA
Description:	Crystal structure of bit1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits