YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170081660, gi...
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	468 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170081660, gi....

Description	E-value	Query Range	Subject Range
gi\|52348807, gi\|... - gi\|52786305\|ref\|YP_092134.1\| 6-phosphogluconate dehydrogenase [Bacillus licheniformis ATCC 14580], g...	526.0	[0..1]	[467..1]
gi\|221323828 - gi\|221323828\|ref\|ZP_03605122.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD_BACSU - 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating OS=Bacillus subtilis (strain 16... gi\|221319552 - gi\|221319552\|ref\|ZP_03600846.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... gi\|221314629 - gi\|221314629\|ref\|ZP_03596434.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD2_BACSU - 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4	521.0	[0..1]	[467..1]
gi\|56123318 - gi\|56123318\|gb\|AAV74553.1\| Gnd [Escherichia coli]	518.0	[0..1]	[468..1]
gi\|194436277, gi... - gi\|83588030\|ref\|ZP_00926655.1\| COG0362: 6-phosphogluconate dehydrogenase [Escherichia coli 101-1], g...	518.0	[0..1]	[468..1]
gi\|209748152, gi... - pir\|\|D85828 gluconate-6-phosphate dehydrogenase [imported] - Escherichia coli (strain O157:H7, subst... gi\|208817129, gi... - gi\|208817129\|ref\|ZP_03258221.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli ... gi\|208741347, gi... - gi\|208821224\|ref\|ZP_03261544.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli ... gi\|12516213, gi\|... - gi\|15802508\|ref\|NP_288534.1\| 6-phosphogluconate dehydrogenase [Escherichia coli O157:H7 EDL933], gi\|... gi\|209162271, gi... - gi\|209400871\|ref\|YP_002271270.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli... gi\|15832084, gi\|... - gi\|15832084\|ref\|NP_310857.1\| 6-phosphogluconate dehydrogenase [Escherichia coli O157:H7], gi\|1336229... gi\|217329567, gi... - gi\|217329567\|ref\|ZP_03445646.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli ... gi\|189371570, gi... - gi\|189371570\|gb\|EDU89986.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli O157... gi\|189378533, gi... - gi\|189378533\|gb\|EDU96949.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli O157... gi\|195939367 - gi\|195939367\|ref\|ZP_03084749.1\| 6-phosphogluconate dehydrogenase [Escherichia coli O157:H7 str. EC40... gi\|208807174, gi... - gi\|208807174\|ref\|ZP_03249511.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli ... gi\|168764114, gi... - gi\|189365870\|gb\|EDU84286.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli O157... gi\|254793811, gi... - gi\|254793811\|ref\|YP_003078648.1\| gluconate-6-phosphate dehydrogenase, decarboxylating [Escherichia c... gi\|168769779, gi... - gi\|189361280\|gb\|EDU79699.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli O157... gi\|168775525, gi... - gi\|187769013\|gb\|EDU32857.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli O157... gi\|189000136, gi... - gi\|189000136\|gb\|EDU69122.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli O157... gi\|15832084, gi\|... - gi\|15832084\|ref\|NP_310857.1\| 6-phosphogluconate dehydrogenase [Escherichia coli O157:H7 str. Sakai],... gi\|188014353, gi... - gi\|188014353\|gb\|EDU52475.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli O157... gi\|168757570, gi... - gi\|189355502\|gb\|EDU73921.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Escherichia coli O157...	518.0	[0..1]	[468..1]
gi\|56420879, gi\|... - gi\|56420879\|ref\|YP_148197.1\| 6-phosphogluconate dehydrogenase [Geobacillus kaustophilus HTA426], gi\|...	518.0	[0..1]	[467..1]
gi\|91072889, gi\|... - gi\|91211315\|ref\|YP_541301.1\| 6-phosphogluconate dehydrogenase [Escherichia coli UTI89], gi\|91072889\|...	518.0	[0..1]	[468..1]

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Predicted Domain #1

Region A:
Residues: [1-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQQIGVVG MAVMGRNLAL NIESRGYTVS IFNRSREKTE EVIAENPGKK LVPYYTVKEF  60
   61 VESLETPRRI LLMVKAGAGT DAAIDSLKPY LDKGDIIIDG GNTFFQDTIR RNRELSAEGF 120
  121 NFIGTGVSGG EEGALKGPSI MPGGQKEAYE LVAPILTKIA AVAEDGEPCV TYIGADGAGH 180
  181 YVKMVHNGIE YGDMQLIAEA YSLLKGGLNL TNEELAQTFT EWNNGELSSY LIDITKDIFT 240
  241 KKDEDGNYLV DVILDEAANK GTGKWTSQSA LDLGEPLSLI TESVFARYIS SLKDQRVAAS 300
  301 KVLSGPQAQP AGDKAEFIEK VRRALYLGKI VSYAQGFSQL RAASEEYNWD LNYGEIAKIF 360
  361 RAGCIIRAQF LQKITDAYAE NPQIANLLLA PYFKQIADDY QQALRDVVAY AVQNGIPVPT 420
  421 FSAAVAYYDS YRAAVLPANL IQAQRDYFGA HTYKRIDKEG VFHTEWLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	138.0
Match:	2iyoA
Description:	No description for 2iyoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits