YRC Public Data Repository - Protein Structure Prediction

Protein:	RL7_BUCA5
Organism:	Buchnera aphidicola str. 5A (Acyrthosiphon pisum)
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL7_BUCA5.

Description	E-value	Query Range	Subject Range
RL7_BLOPB - 50S ribosomal protein L7/L12 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rplL PE=3 SV=1	129.0	[0..1]	[122..1]
gi\|30410810 - gi\|30410810\|ref\|NP_660396.2\| 50S ribosomal protein L7/L12 [Buchnera aphidicola str. Sg (Schizaphis g...	128.0	[0..1]	[122..8]
RL7_BUCAP - 50S ribosomal protein L7/L12 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=rplL P... RL7_BUCAP - 50S ribosomal protein L7/L12 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rplL PE=3 SV=2	125.0	[0..1]	[122..1]
RL7_BLOFL - 50S ribosomal protein L7/L12 OS=Blochmannia floridanus GN=rplL PE=3 SV=1	121.0	[0..1]	[122..1]
gi\|77024207 - gi\|77024207\|gb\|ABA55574.1\| chloroplast 50S ribosomal protein L7 [Pavlova lutheri]	120.0	[0..1]	[105..35]
gi\|52694926, gi\|... - gi\|52694932\|gb\|AAU85617.1\| 50S ribosomal protein L7/L12 [Borrelia garinii], gi\|52694926\|gb\|AAU85614....	119.0	[0..1]	[122..1]
gi\|71361655 - gi\|71361655\|ref\|NP_001025071.1\| mitochondrial ribosomal protein L12 [Rattus norvegicus]	118.0	[0..3]	[122..138]
RL7_BAUCH - 50S ribosomal protein L7/L12 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rplL PE=3 ...	118.0	[0..1]	[122..1]

Back

Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITKEQILE AISEMSVMNV VDLITAMEEK FGVSASMSIN SNNHNEKDLR EEKTEFDIFL  60
   61 KVIGPNKVSV IKTVRSATGL GLKEAKDLVE SAPTVLKENI SKEDAESLKK TLEDVGAEIE 120
  121 IK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1rquA
Description:	NMR structure of L7 dimer from E.coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits