YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213853062
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213853062.

Description	E-value	Query Range	Subject Range
gi\|62178659, gi\|... - gi\|62178659\|ref\|YP_215076.1\| DNA-J like membrane chaperone protein [Salmonella enterica subsp. enter...	7.0E-75	[1..270]	[1..270]
gi\|91209117, gi\|... - gi\|91209117\|ref\|YP_539103.1\| DnaJ-like protein DjlA [Escherichia coli UTI89], gi\|91070691\|gb\|ABE0557... gi\|26245981, gi\|... - gi\|26245981\|ref\|NP_752020.1\| Dna-J like membrane chaperone protein [Escherichia coli CFT073], gi\|261... gi\|237704201, gi... - gi\|237704201\|ref\|ZP_04534682.1\| predicted protein [Escherichia sp. 3_2_53FAA], gi\|226902113\|gb\|EEH88... gi\|117622345, gi... - gi\|117622345\|ref\|YP_851258.1\| DNA-J like membrane chaperone protein [Escherichia coli APEC O1], gi\|1...	3.0E-71	[1..270]	[32..302]
gi\|75234296 - gi\|75234296\|ref\|ZP_00718674.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli E110019]	2.0E-70	[1..270]	[1..271]
DJLA_ECOL6 - DnaJ-like protein DjlA OS=Escherichia coli O6 GN=djlA PE=3 SV=2 gi\|215485219, gi... - gi\|215485219\|ref\|YP_002327650.1\| Dna-J like membrane chaperone protein [Escherichia coli O127:H6 str... gi\|162138511 - gi\|162138511\|ref\|YP_539103.2\| DNA-J like membrane chaperone protein [Escherichia coli UTI89] gi\|218687933, gi... - gi\|218687933\|ref\|YP_002396145.1\| Dna-J like membrane chaperone protein [Escherichia coli ED1a], gi\|2... gi\|218363765, gi... - gi\|218556996\|ref\|YP_002389909.1\| Dna-J like membrane chaperone protein [Escherichia coli S88], gi\|21... DJLA_ECOL6 - Co-chaperone protein DjlA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=djlA PE=...	2.0E-70	[1..270]	[1..271]
DJLA_ECOLI - DnaJ-like protein djlA - Escherichia coli gi\|83585219 - gi\|83585219\|ref\|ZP_00923869.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli 101-1] EG11570 - membrane-anchored DnaK co-chaperone, DNA-binding protein / DnaK co-chaperone, membrane-anchored, DNA... gi\|188490286, gi... - gi\|75511719\|ref\|ZP_00734357.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli 53638], ... gi\|238861000, gi... - gi\|238899460\|ref\|YP_002925256.1\| DnaJ-like protein, membrane anchored [Escherichia coli BW2952], gi\|... gi\|170079718, gi... - gi\|170079718\|ref\|YP_001729038.1\| DnaJ-like protein, membrane anchored [Escherichia coli str. K-12 su... EG11570 - membrane-anchored DnaK co-chaperone, DNA-binding protein / DnaK co-chaperone, membrane-anchored, DNA... gi\|21321936, gi\|... - gi\|89106939\|ref\|AP_000719.1\| DnaJ-like protein, membrane anchored [Escherichia coli str. K-12 substr... gi\|170021587, gi... - gi\|170021587\|ref\|YP_001726541.1\| Dna-J like membrane chaperone protein [Escherichia coli ATCC 8739],...	2.0E-70	[1..270]	[1..271]
gi\|208734691, gi... - gi\|208813414\|ref\|ZP_03254743.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|209400473, gi... - gi\|209400473\|ref\|YP_002268665.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|209917247, gi... - gi\|209917247\|ref\|YP_002291331.1\| Dna-J like membrane chaperone protein [Escherichia coli SE11], gi\|2... gi\|217325573, gi... - gi\|217325573\|ref\|ZP_03441657.1\| DnaJ domain protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|218552640, gi... - gi\|218552640\|ref\|YP_002385553.1\| Dna-J like membrane chaperone protein [Escherichia coli IAI1], gi\|2... gi\|218350259, gi... - gi\|218693527\|ref\|YP_002401194.1\| Dna-J like membrane chaperone protein [Escherichia coli 55989], gi\|... gi\|218368463, gi... - gi\|218698477\|ref\|YP_002406106.1\| Dna-J like membrane chaperone protein [Escherichia coli IAI39], gi\|... gi\|218703316, gi... - gi\|218703316\|ref\|YP_002410835.1\| Dna-J like membrane chaperone protein [Escherichia coli UMN026], gi... gi\|110613669, gi... - gi\|110804121\|ref\|YP_687641.1\| DNA-J like membrane chaperone protein [Shigella flexneri 5 str. 8401],... gi\|15829314, gi\|... - gi\|15829314\|ref\|NP_308087.1\| Dna-J like membrane chaperone protein [Escherichia coli O157:H7 str. Sa... gi\|168756886, gi... - gi\|189356092\|gb\|EDU74511.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168756886... gi\|189364062, gi... - gi\|189364062\|gb\|EDU82481.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168766750... DJLA_SHIFL - Co-chaperone protein DjlA OS=Shigella flexneri GN=djlA PE=3 SV=1 gi\|189374721, gi... - gi\|189374721\|gb\|EDU93137.1\| DnaJ domain protein [Escherichia coli O157:H7 str. EC869], gi\|168785113\|... gi\|195937731 - gi\|195937731\|ref\|ZP_03083113.1\| Dna-J like membrane chaperone protein [Escherichia coli O157:H7 str.... gi\|25363604, gi\|... - gi\|25363604\|pir\|\|D90636 probable DNA binding protein [imported] - Escherichia coli (strain O157:H7,... gi\|12512750, gi\|... - gi\|15799740\|ref\|NP_285752.1\| DNA-J like membrane chaperone protein [Escherichia coli O157:H7 EDL933]... gi\|30039864, gi\|... - gi\|30061622\|ref\|NP_835793.1\| DNA-J like membrane chaperone protein [Shigella flexneri 2a str. 2457T]... gi\|254791194, gi... - gi\|254791194\|ref\|YP_003076031.1\| DnaJ-like membrane chaperone protein [Escherichia coli O157:H7 str.... gi\|56383142, gi\|... - gi\|56479591\|ref\|NP_706011.2\| DNA-J like membrane chaperone protein [Shigella flexneri 2a str. 301], ... gi\|82542661, gi\|... - gi\|82542661\|ref\|YP_406608.1\| DNA-J like membrane chaperone protein [Shigella boydii Sb227], gi\|81244... gi\|82775460, gi\|... - gi\|82775460\|ref\|YP_401807.1\| DNA-J like membrane chaperone protein [Shigella dysenteriae Sd197], gi\|... gi\|74310674, gi\|... - gi\|74310674\|ref\|YP_309093.1\| DNA-J like membrane chaperone protein [Shigella sonnei Ss046], gi\|73854... DJLA_ECO57 - Co-chaperone protein DjlA OS=Escherichia coli O157:H7 GN=djlA PE=3 SV=1 gi\|75209421 - gi\|75209421\|ref\|ZP_00709653.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli B171]	2.0E-70	[1..270]	[1..271]
gi\|110640269, gi... - gi\|110640269\|ref\|YP_667997.1\| Dna-J like membrane chaperone protein [Escherichia coli 536], gi\|11034...	2.0E-70	[1..270]	[1..271]
gi\|75236946, gi\|... - gi\|75236946\|ref\|ZP_00721005.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli F11], gi...	3.0E-70	[1..270]	[1..271]
gi\|75175615, gi\|... - gi\|75175615\|ref\|ZP_00695823.1\| COG1076: DnaJ-domain-containing proteins 1 [Shigella boydii BS512], g...	5.0E-70	[1..270]	[1..271]
gi\|75194276, gi\|... - gi\|75194276\|ref\|ZP_00704346.1\| COG1076: DnaJ-domain-containing proteins 1 [Escherichia coli HS], gi\|...	6.0E-70	[1..270]	[1..271]

Back

Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYWGKIIGV AVALMMGGGF WGVVLGLLVG HMFDKARSRK MAWFANQRER QALFFATTFE  60
   61 VMGHLTKSKG RVTEADIHIA SQLMDRMNLH GDSRTAAQNA FRVGKADNYP LREKMRQFRS 120
  121 VCFGRFDLIR MFLEIQIQAA FADGSLHPNE REVLYVIAEE LGISRVQFDQ FLRMMQGGAQ 180
  181 FGGGYHQQSG GGWQQAQRG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.74
Match:	2ou3A
Description:	No description for 2ou3A was found.

Predicted Domain #2

Region A:
Residues: [200-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTLEDACNVL GVKTTDDATT IKRAYRKLMS EHHPDKLVAK GLPPEMMEMA KQKAQEIQKA  60
   61 YELIKEQKGF K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2dmxA
Description:	No description for 2dmxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits