YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214001444
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	474 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214001444.

Description	E-value	Query Range	Subject Range
gi\|62128246, gi\|... - gi\|62180613\|ref\|YP_217030.1\| cobyrinic acid a,c-diamide synthase [Salmonella enterica subsp. enteric...	1.0E-84	[16..474]	[1..459]
gi\|36786322, gi\|... - gi\|37526889\|ref\|NP_930233.1\| cobyrinic acid a,c-diamide synthase [Photorhabdus luminescens subsp. la...	2.0E-84	[21..474]	[7..460]
CBIA_SALTY - Cobyrinic acid A,C-diamide synthase OS=Salmonella typhimurium GN=cbiA PE=3 SV=3 CBIA_SALTY - Cobyrinic acid A,C-diamide synthase OS=Salmonella typhimurium GN=cbiA PE=3 SV=3 lcl\|NC_016856.1_... - [gene=cbiA] [protein=cobyrinic acid a,c-diamide synthase] [protein_id=YP_005238064.1] [location=comp... CBIA_SALTY - Cobyrinate a,c-diamide synthase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=c... gi\|197265495, gi... - gi\|197265495\|ref\|ZP_03165569.1\| cobyrinic Acid a,c-diamide synthase [Salmonella enterica subsp. ente...	3.0E-84	[16..474]	[1..459]
gi\|154420\|gb\|AAA... - precorrin amidase gi\|154420 - gi\|154420\|gb\|AAA27252.1\| precorrin amidase [Salmonella enterica subsp. enterica serovar Typhimurium]	2.0E-83	[16..474]	[1..459]
gi\|58866720 - gi\|58866720\|gb\|AAW83020.1\| cobyrinic acid a,c-diamide synthase [Escherichia blattae]	9.0E-83	[15..474]	[1..460]
gi\|77977317 - gi\|77977317\|ref\|ZP_00832769.1\| COG1797: Cobyrinic acid a,c-diamide synthase [Yersinia intermedia ATC...	8.0E-82	[15..474]	[26..495]
gi\|77975823 - gi\|77975823\|ref\|ZP_00831357.1\| COG1797: Cobyrinic acid a,c-diamide synthase [Yersinia frederiksenii ...	8.0E-82	[15..474]	[26..492]
gi\|77962418 - gi\|77962418\|ref\|ZP_00826238.1\| COG1797: Cobyrinic acid a,c-diamide synthase [Yersinia mollaretii ATC...	3.0E-80	[15..471]	[1..463]
gi\|146399694, gi... - gi\|88934028\|ref\|ZP_01139672.1\| Cobyrinic acid a,c-diamide synthase CbiA [Geobacter uraniumreducens R...	1.0E-79	[21..473]	[2..458]
gi\|76260880, gi\|... - gi\|76260880\|ref\|ZP_00768507.1\| Cobyrinic acid a,c-diamide synthase CbiA [Chloroflexus aurantiacus J-... gi\|222526014, gi... - gi\|222526014\|ref\|YP_002570485.1\| cobyrinic acid a,c-diamide synthase [Chloroflexus sp. Y-400-fl], gi... gi\|53796051 - ref\|ZP_00357068.1\| COG1797: Cobyrinic acid a,c-diamide synthase [Chloroflexus aurantiacus]	7.0E-79	[18..473]	[1..458]

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Predicted Domain #1

Region A:
Residues: [1-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVPVYPYHP EQDQGNGGKA SRFILAGTGS GCGKTTVTLG LLRLLQKRAL RVQPFKVGPD  60
   61 YLDTGWHTAI CGVASRNLDS FMLPPPVLNA LFCEQMRQAD IAVIEGVMGL YDGYGVDPNY 120
  121 CSTAAMAKQL GCPVILLVDG KAVSTSLAAI VMGFQHFDPT LNLAGVIVNR VTSDAHYQLL 180
  181 KNAIEHYCSL PVLGYVPPCD GVALPERHLG LITARESLVN QQSWHDFAAT LEQTVDVDAL 240
  241 LSLSLLSALP AGMWPERPDN TAGAGLTLAL ADDEAFNFYY PDNIDLLERA GVNIVRFSPL 300
  301 HDRALPDCQM IWLGGGYPEL YAADLAANTA MLKHLRAAHQ RGVAIYAECG GLMYLGSTLE 360
  361 DSGGEIHQMA NIIPGHSKMG KRLTRFGYCE AQAMQPTLLA VPGEIVRGHE FHYSDFIPET 420
  421 PAVMACRKVR DGRVLQEWTG GWQTGNTFAS YLHVHFAQRP EMLQHWLAAA RRVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	1s1mA
Description:	Crystal Structure of E. Coli CTP Synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits