YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197939225, gi...
Organism:	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197939225, gi....

Description	E-value	Query Range	Subject Range
gi\|218558805, gi... - gi\|218558805\|ref\|YP_002391718.1\| flagellar biosynthesis protein FliP [Escherichia coli S88], gi\|2183... gi\|91211166, gi\|... - gi\|91211166\|ref\|YP_541152.1\| flagellar biosynthesis protein FliP [Escherichia coli UTI89], gi\|910727... gi\|117624088, gi... - gi\|117624088\|ref\|YP_853001.1\| flagellar biosynthesis protein FliP [Escherichia coli APEC O1], gi\|115...	5.0E-83	[1..245]	[1..245]
FLIP_SALTY - Flagellar biosynthetic protein FliP OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... gi\|167993554, gi... - gi\|205328373\|gb\|EDZ15137.1\| flagellar biosynthetic protein FliP [Salmonella enterica subsp. enterica... lcl\|NC_016856.1_... - [gene=fliP] [protein=flagellar biosynthesis protein FliP] [protein_id=YP_005237949.1] [location=2076... FLIP_SALTY - Flagellar biosynthetic protein fliP OS=Salmonella typhimurium GN=fliP PE=1 SV=1 FLIP_SALTY - Flagellar biosynthetic protein fliP OS=Salmonella typhimurium GN=fliP PE=1 SV=1	5.0E-83	[1..245]	[1..245]
gi\|124531425, gi... - gi\|124531425\|ref\|ZP_01701709.1\| flagellar biosynthetic protein FliP [Escherichia coli B], gi\|1244985... gi\|187427203, gi... - gi\|75175126\|ref\|ZP_00695456.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Shigella boy... gi\|209912629, gi... - gi\|209919370\|ref\|YP_002293454.1\| flagellar biosynthesis protein FliP [Escherichia coli SE11], gi\|209... gi\|218705441, gi... - gi\|218705441\|ref\|YP_002412960.1\| flagellar biosynthesis protein FliP [Escherichia coli UMN026], gi\|2... gi\|170019719, gi... - gi\|170019719\|ref\|YP_001724673.1\| flagellar biosynthesis protein FliP [Escherichia coli ATCC 8739], g...	9.0E-83	[1..245]	[1..245]
gi\|78100273 - gi\|78100273\|gb\|ABB20928.1\| flagellar biosynthesis/transport protein [Citrobacter koseri] gi\|157145258, gi... - gi\|157145258\|ref\|YP_001452577.1\| flagellar biosynthesis protein FliP [Citrobacter koseri ATCC BAA-89...	9.0E-83	[1..245]	[1..245]
gi\|56413108, gi\|... - gi\|56413108\|ref\|YP_150183.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. enteric... gi\|197093511, gi... - gi\|197362034\|ref\|YP_002141671.1\| flagellar biosynthesis protein FliP [Salmonella enterica subsp. ent...	1.0E-82	[1..245]	[1..245]
gi\|75196003, gi\|... - gi\|75196003\|ref\|ZP_00706073.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ...	1.0E-82	[1..245]	[1..245]
gi\|188487812, gi... - gi\|75511435\|ref\|ZP_00734110.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ...	1.0E-82	[1..245]	[1..245]
FLIP_ECOLI - Flagellar biosynthetic protein fliP precursor - Escherichia coli gi\|168751877, gi... - gi\|188014148\|gb\|EDU52270.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC411... gi\|189354902, gi... - gi\|189354902\|gb\|EDU73321.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC440... gi\|189365562, gi... - gi\|189365562\|gb\|EDU83978.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC450... gi\|168771555, gi... - gi\|189359722\|gb\|EDU78141.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC448... gi\|168777375, gi... - gi\|187767404\|gb\|EDU31248.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC419... gi\|188999261, gi... - gi\|188999261\|gb\|EDU68247.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC407... gi\|168790292, gi... - gi\|189370182\|gb\|EDU88598.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC869... gi\|168802295, gi... - gi\|189375715\|gb\|EDU94131.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. EC508... gi\|254592998, gi... - gi\|254793598\|ref\|YP_003078435.1\| flagellar biosynthesis protein [Escherichia coli O157:H7 str. TW143... gi\|253324147, gi... - gi\|253773103\|ref\|YP_003035934.1\| flagellar biosynthetic protein FliP [Escherichia coli BL21(DE3)], g... gi\|238861098, gi... - gi\|238901153\|ref\|YP_002926949.1\| flagellar biosynthesis protein [Escherichia coli BW2952], gi\|238861... gi\|237705907, gi... - gi\|237705907\|ref\|ZP_04536388.1\| flagellar biosynthetic protein fliP [Escherichia sp. 3_2_53FAA], gi\|... FLIP_ECO57 - Flagellar biosynthetic protein FliP OS=Escherichia coli O157:H7 GN=fliP PE=3 SV=1 EG11975 - flagellar biosynthesis protein / Flagellin export apparatus, integral membrane protein gi\|12516055, gi\|... - gi\|15802383\|ref\|NP_288409.1\| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 EDL933], ... gi\|194429937, gi... - gi\|75208809\|ref\|ZP_00709093.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ... EG11975 - flagellar biosynthesis protein / Flagellin export apparatus, integral membrane protein gi\|218554528, gi... - gi\|218554528\|ref\|YP_002387441.1\| flagellar biosynthesis protein FliP [Escherichia coli IAI1], gi\|218... gi\|75228496, gi\|... - gi\|75228496\|ref\|ZP_00715133.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ... gi\|218352285, gi... - gi\|218695553\|ref\|YP_002403220.1\| flagellar biosynthesis protein FliP [Escherichia coli 55989], gi\|21... gi\|75233931, gi\|... - gi\|75233931\|ref\|ZP_00718384.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ... gi\|193066380, gi... - gi\|75255542\|ref\|ZP_00727334.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ... gi\|170081592, gi... - gi\|170081592\|ref\|YP_001730912.1\| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. ... gi\|170682430, gi... - gi\|170682430\|ref\|YP_001743297.1\| flagellar biosynthetic protein FliP [Escherichia coli SMS-3-5], gi\|... gi\|195939254 - gi\|195939254\|ref\|ZP_03084636.1\| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. E... gi\|208725166, gi... - gi\|208810650\|ref\|ZP_03252526.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. E... gi\|208731278, gi... - gi\|208816935\|ref\|ZP_03258055.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. E... gi\|208739708, gi... - gi\|208819585\|ref\|ZP_03259905.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. E... gi\|194421480, gi... - gi\|83585017\|ref\|ZP_00923671.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ... gi\|209400543, gi... - gi\|209400543\|ref\|YP_002271065.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. ... gi\|75190966, gi\|... - gi\|75190966\|ref\|ZP_00704233.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ... gi\|217318163, gi... - gi\|217328816\|ref\|ZP_03444897.1\| flagellar biosynthetic protein FliP [Escherichia coli O157:H7 str. T... gi\|13362155, gi\|... - gi\|15831941\|ref\|NP_310714.1\| flagellar biosynthesis protein FliP [Escherichia coli O157:H7 str. Saka... gi\|1736614, gi\|8... - gi\|89108780\|ref\|AP_002560.1\| flagellar biosynthesis protein [Escherichia coli str. K-12 substr. W311...	2.0E-82	[1..245]	[1..245]
gi\|227885623, gi... - gi\|227885623\|ref\|ZP_04003428.1\| flagellar biosynthesis protein FliP [Escherichia coli 83972], gi\|227... gi\|190906399, gi... - gi\|75239158\|ref\|ZP_00723135.1\| COG1338: Flagellar biosynthesis pathway, component FliP [Escherichia ... gi\|110615465, gi... - gi\|110805917\|ref\|YP_689437.1\| flagellar biosynthesis protein FliP [Shigella flexneri 5 str. 8401], g... gi\|161485898 - gi\|161485898\|ref\|NP_707833.2\| flagellar biosynthesis protein FliP [Shigella flexneri 2a str. 301] gi\|218699491, gi... - gi\|218699491\|ref\|YP_002407120.1\| flagellar biosynthesis protein FliP [Escherichia coli IAI39], gi\|21... gi\|26108621, gi\|... - gi\|26248217\|ref\|NP_754257.1\| flagellar biosynthesis protein FliP [Escherichia coli CFT073], gi\|26108... gi\|110642054, gi... - gi\|110642054\|ref\|YP_669784.1\| flagellar biosynthesis protein FliP [Escherichia coli 536], gi\|1103436...	2.0E-82	[1..245]	[1..245]
gi\|74312488, gi\|... - gi\|74312488\|ref\|YP_310907.1\| flagellar biosynthesis protein FliP [Shigella sonnei Ss046], gi\|7385596...	1.0E-81	[1..245]	[1..245]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLLFLSLA GLWLFSPAAA AQLPGLISQP LAGGGQSWSL SVQTLVFITS LTFLPAILLM  60
   61 MTSFTRIIIV FGLLRNALGT PSAPPNQVLL GLALFLTFFI MSPVIDKIYV DAYQPFSEQK 120
  121 ISMQEALDKG AQPLRAFMLR QTREADLALF ARLANSGPLQ GPEAVPMRIL LPAYVTSELK 180
  181 TAFQIGFTIF IPFLIIDLVI ASVLMALGMM MVPPATIALP FKLMLFVLVD GWQLLVGSLA 240
  241 QSFYS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	124.251812
Match:	PF00813.11
Description:	No description for PF00813.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.960	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits