YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194120158, gi...
Organism:	Drosophila sechellia
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194120158, gi....

Description	E-value	Query Range	Subject Range
gi\|195145378, gi... - gi\|195145378\|ref\|XP_002013673.1\| GL23270 [Drosophila persimilis], gi\|194102616\|gb\|EDW24659.1\| GL2327... gi\|54638389\|gb\|E... - GA17176-PA [Drosophila pseudoobscura], GA17176 [Drosophila pseudoobscura pseudoobscura] gi\|54638389, gi\|... - gi\|54638389\|gb\|EAL27791.1\| GA17176 [Drosophila pseudoobscura pseudoobscura], gi\|125774797\|ref\|XP_001...	165.0	[0..1]	[129..1]
gi\|7327286 - gi\|7327286\|gb\|AAB29028.2\| RNA polymerase II subunit 9 [Drosophila melanogaster]	163.0	[0..1]	[129..1]
gi\|58389474, gi\|... - gi\|58389474\|ref\|XP_317057.2\| AGAP008393-PA [Anopheles gambiae str. PEST], gi\|55237295\|gb\|EAA12329.2\|...	162.0	[0..2]	[129..1]
gi\|50797497 - gi\|50797497\|ref\|XP_423952.1\| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polypepti...	161.0	[0..4]	[129..78]
gi\|149721893 - gi\|149721893\|ref\|XP_001493833.1\| PREDICTED: similar to RNA Polymerase II subunit 14.5 kD [Equus caba... tr\|M3X8K0\|M3X8K0... - DNA-directed RNA polymerase subunit OS=Felis catus GN=POLR2I PE=3 SV=1 POLR2I - polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa tr\|G1TAL1\|G1TAL1... - pep:novel scaffold:oryCun2:GL018786:846736:847756:-1 gene:ENSOCUG00000013044 transcript:ENSOCUT00000... gi\|76641410 - gi\|76641410\|ref\|XP_871092.1\| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polypepti... RPB9_MOUSE - DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus GN=Polr2i PE=1 SV=1 CCDS12487.1_1 - null RPB9_PIG - DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa GN=POLR2I PE=3 SV=1 gi\|126329203 - gi\|126329203\|ref\|XP_001364276.1\| PREDICTED: similar to RNA Polymerase II subunit 14.5 kD [Monodelphi... gi\|73947834 - gi\|73947834\|ref\|XP_853642.1\| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polypepti... gi\|114676836 - gi\|114676836\|ref\|XP_001162834.1\| PREDICTED: DNA directed RNA polymerase II polypeptide I [Pan troglo... gi\|208967088, gi... - gi\|208967088\|dbj\|BAG73558.1\| polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa [synthetic co... ENSCJAT00000018746 - null gi\|149056348, gi... - gi\|34855683\|ref\|XP_214895.2\| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polypepti... gi\|109124448 - gi\|109124448\|ref\|XP_001102318.1\| PREDICTED: similar to DNA-directed RNA polymerase II 14.5 kDa polyp...	155.0	[0..6]	[129..2]
gi\|48105783 - gi\|48105783\|ref\|XP_396002.1\| PREDICTED: similar to RNA polymerase II 15kD subunit CG3284-PA [Apis me...	154.0	[0..3]	[129..5]
gi\|157124261, gi... - gi\|94468684\|gb\|ABF18191.1\| RNA polymerase II subunit 9 [Aedes aegypti], gi\|157124261\|ref\|XP_00166039...	153.0	[0..3]	[129..1]
gi\|91084187 - gi\|91084187\|ref\|XP_967086.1\| PREDICTED: similar to GA17176-PA [Tribolium castaneum]	153.0	[0..8]	[129..9]
RPB9_BOVIN - DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I PE=1 SV=1	153.0	[0..6]	[129..2]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTAFDAAHT EGPGFVGIRF CQECNNMLYP KEDKENKILL YACRNCDYKQ EADSNCIYVN  60
   61 KIMHEIDELT HIVPDVISDP TLPRTEDHAC PKCSHREAVF FQAQTRRAEE EMRLYYVCTN 120
  121 QNCTHRWTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1i3qI
Description:	RBP9 subunit of RNA polymerase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits