YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197365122, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197365122, gi....

Description	E-value	Query Range	Subject Range
gi\|39980854 - gi\|39980854\|ref\|NP_460910.2\| transposase for IS200 [Salmonella typhimurium LT2] gi\|205343070, gi... - gi\|205360131\|ref\|ZP_03224523.1\| transposase [Salmonella enterica subsp. enterica serovar Weltevreden... lcl\|NC_016856.1_... - [gene=tnpA_7] [protein=transposase for IS200] [protein_id=YP_005237924.1] [location=complement(20571...	3.0E-58	[1..152]	[18..169]
gi\|26248994, gi\|... - gi\|26248994\|ref\|NP_755034.1\| hypothetical protein c3152 [Escherichia coli CFT073], gi\|26248470\|ref\|N... gi\|218706631, gi... - gi\|218707308\|ref\|YP_002414827.1\| transposase IS605 family, IS200 group [Escherichia coli UMN026], gi... gi\|170767762, gi... - gi\|170769996\|ref\|ZP_02904449.1\| transposase [Escherichia albertii TW07627], gi\|170769754\|ref\|ZP_0290...	1.0E-57	[1..152]	[18..169]
gi\|229896537, gi... - gi\|229896537\|ref\|ZP_04511705.1\| transposase [Yersinia pestis Pestoides A], gi\|229896171\|ref\|ZP_04511... gi\|229697470, gi... - gi\|229897434\|ref\|ZP_04512590.1\| transposase [Yersinia pestis biovar Orientalis str. PEXU2], gi\|22984... gi\|229843066, gi... - gi\|229900060\|ref\|ZP_04515197.1\| transposase [Yersinia pestis biovar Orientalis str. India 195], gi\|2... gi\|229901197, gi... - gi\|229904555\|ref\|ZP_04519666.1\| transposase [Yersinia pestis Nepal516], gi\|229903915\|ref\|ZP_04519028... gi\|167420678, gi... - gi\|167422949\|ref\|ZP_02314702.1\| IS1541, transposase [Yersinia pestis biovar Orientalis str. MG05-102... gi\|167423625, gi... - gi\|167426978\|ref\|ZP_02318731.1\| IS1541, transposase [Yersinia pestis biovar Mediaevalis str. K197300... gi\|22127470, gi\|... - gi\|22127857\|ref\|NP_671280.1\| transposase [Yersinia pestis KIM], gi\|22127569\|ref\|NP_670992.1\| transpo... gi\|165937484, gi... - gi\|165940354\|ref\|ZP_02228873.1\| IS1541, transposase [Yersinia pestis biovar Orientalis str. IP275], ... gi\|45435450, gi\|... - gi\|45443553\|ref\|NP_995092.1\| transposase for the IS1541 insertion element [Yersinia pestis biovar Mi... gi\|166011680, gi... - gi\|166012262\|ref\|ZP_02233160.1\| IS1541, transposase [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|166212945, gi... - gi\|166214396\|ref\|ZP_02240431.1\| IS1541, transposase [Yersinia pestis biovar Antiqua str. B42003004],... gi\|152961618, gi... - gi\|153950386\|ref\|YP_001400650.1\| IS1541, transposase [Yersinia pseudotuberculosis IP 31758], gi\|1539... gi\|167051670, gi... - gi\|167402375\|ref\|ZP_02307840.1\| IS1541, transposase [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|162420779, gi... - gi\|162421874\|ref\|YP_001604752.1\| IS1541, transposase [Yersinia pestis Angola], gi\|162421858\|ref\|YP_0... gi\|52538019, gi\|... - gi\|52788090\|ref\|YP_093918.1\| putative transposase [Yersinia pestis], gi\|52538019\|emb\|CAG27444.1\| put... gi\|165919811, gi... - gi\|165928553\|ref\|ZP_02224385.1\| IS1541, transposase [Yersinia pestis biovar Orientalis str. F1991016...	2.0E-57	[1..152]	[18..169]
gi\|56414979, gi\|... - gi\|56415441\|ref\|YP_152516.1\| transposase for insertion sequence element IS200 [Salmonella enterica s... gi\|197363908, gi... - gi\|197364371\|ref\|YP_002144008.1\| transposase for insertion sequence element IS200 [Salmonella enteri...	2.0E-57	[1..152]	[1..152]
gi\|16504151, gi\|... - gi\|25302643\|pir\|\|AB0875 transposase for insertion sequence element IS200 [imported] - Salmonella ent... gi\|29138970, gi\|... - gi\|29143336\|ref\|NP_806678.1\| transposase for insertion sequence element IS200 [Salmonella enterica s... gi\|16761849 - gi\|16761849\|ref\|NP_457466.1\| transposase for insertion sequence element IS200 [Salmonella enterica s...	6.0E-57	[1..152]	[1..152]
gi\|2125922, gi\|7... - gi\|739093\|prf\|\|2002282B insertion sequence IS200, gi\|439594\|gb\|AAC36992.1\| unknown [Escherichia coli...	7.0E-57	[1..152]	[1..152]
gi\|197096164, gi... - gi\|197364687\|ref\|YP_002144324.1\| transposase for insertion sequence element IS200 [Salmonella enteri... gi\|213850175 - gi\|213850175\|ref\|ZP_03381073.1\| transposase for insertion sequence element IS200 [Salmonella enteric... gi\|56415757, gi\|... - gi\|56415757\|ref\|YP_152832.1\| transposase for insertion sequence element IS200 [Salmonella enterica s... gi\|2765039 - gi\|2765039\|emb\|CAA71045.1\| transposase [Salmonella typhi] gi\|2765039\|emb\|C... - transposase [Salmonella typhi] gi\|29143766, gi\|... - gi\|29143766\|ref\|NP_807108.1\| transposase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2...	7.0E-57	[1..152]	[1..152]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDEKSLAHT RWNCKYHIVF APKYRRQAFY GEKRRAVGSI LRKLCEWKNV RILEAECCAD  60
   61 HIHMLLEIPP KMSVSSFMGY LKGKSSLMLY EQFGDLKFKY RNREFWCRGY YVDTVGKNTA 120
  121 KIQDYIKHQL EEDKMGEQLS IPYPGSPFTG RK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.09691
Match:	2ec2A
Description:	No description for 2ec2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits