YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195631212, gi...
Organism:	Salmonella enterica subsp. enterica serovar Newport str. SL317
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195631212, gi....

Description	E-value	Query Range	Subject Range
gi\|47091944, gi\|... - gi\|47091944\|ref\|ZP_00229738.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 4b ... gi\|254823602 - gi\|254823602\|ref\|ZP_05228603.1\| PduU protein [Listeria monocytogenes FSL J1-194] gi\|25341011, gi\|... - pir\|\|AC1571 Salmonelle enterica PduU protein homolog lin1108 [imported] - Listeria innocua (strain C... gi\|225876207, gi... - gi\|226223745\|ref\|YP_002757852.1\| PduU protein [Listeria monocytogenes Clip81459], gi\|225876207\|emb\|C... gi\|133727578, gi... - gi\|153166472\|ref\|ZP_01927042.1\| propanediol utilization protein PduU [Listeria monocytogenes FSL N1-... gi\|46907361, gi\|... - gi\|46907361\|ref\|YP_013750.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 4b F2... gi\|254932976, gi... - gi\|254932976\|ref\|ZP_05266335.1\| PduU protein [Listeria monocytogenes HPB2262], gi\|153201854\|ref\|ZP_0... gi\|16800177 - gi\|16800177\|ref\|NP_470445.1\| hypothetical protein lin1108 [Listeria innocua Clip11262] gi\|255521697 - gi\|255521697\|ref\|ZP_05388934.1\| PduU protein [Listeria monocytogenes FSL J1-175] gi\|254993049 - gi\|254993049\|ref\|ZP_05275239.1\| PduU protein [Listeria monocytogenes FSL J2-064] gi\|254878482 - gi\|254878482\|ref\|ZP_05251192.1\| PduU protein [Listeria monocytogenes FSL J2-071] gi\|254852984 - gi\|254852984\|ref\|ZP_05242332.1\| PduU protein [Listeria monocytogenes FSL R2-503]	8.0E-48	[1..116]	[1..116]
gi\|153174212, gi... - gi\|254828503\|ref\|ZP_05233190.1\| hypothetical protein LmonocytogeFSL_08589 [Listeria monocytogenes FS... gi\|153179234, gi... - gi\|254936141\|ref\|ZP_05267838.1\| hypothetical protein LmonF6_03390 [Listeria monocytogenes F6900], gi... gi\|255026162 - gi\|255026162\|ref\|ZP_05298148.1\| hypothetical protein LmonocytFSL_07070 [Listeria monocytogenes FSL J... gi\|47016603, gi\|... - gi\|47094985\|ref\|ZP_00232598.1\| propanediol utilization protein PduU [Listeria monocytogenes str. 1/2... gi\|16803184 - gi\|16803184\|ref\|NP_464669.1\| hypothetical protein lmo1144 [Listeria monocytogenes EGD-e] gi\|224500758 - gi\|224500758\|ref\|ZP_03669107.1\| hypothetical protein LmonF1_14226 [Listeria monocytogenes Finland 19... gi\|224502560 - gi\|224502560\|ref\|ZP_03670867.1\| hypothetical protein LmonFR_08574 [Listeria monocytogenes FSL R2-561... gi\|16410560, gi\|... - pir\|\|AH1217 Salmonelle enterica PduU protein homolog lmo1144 [imported] - Listeria monocytogenes (st... gi\|153184693, gi... - gi\|254898695\|ref\|ZP_05258619.1\| hypothetical protein LmonJ_02730 [Listeria monocytogenes J0161], gi\|... gi\|153195920, gi... - gi\|254830102\|ref\|ZP_05234757.1\| hypothetical protein Lmon1_02035 [Listeria monocytogenes 10403S], gi... gi\|254911816, gi... - gi\|254911816\|ref\|ZP_05261828.1\| hypothetical protein LmonJ2_03390 [Listeria monocytogenes J2818], gi...	2.0E-47	[1..116]	[1..116]
gi\|92110360 - gi\|92110360\|emb\|CAJ87629.1\| putative propanediol utilization protein PduU [Escherichia coli] gi\|215265300, gi... - gi\|215487228\|ref\|YP_002329659.1\| propanediol utilization protein PduU [Escherichia coli O127:H6 str....	3.0E-46	[1..116]	[1..116]
gi\|73856024, gi\|... - gi\|74312547\|ref\|YP_310966.1\| putative propanediol utilization protein: polyhedral bodies [Shigella s... gi\|157156977, gi... - gi\|75186813\|ref\|ZP_00700080.1\| COG4810: Ethanolamine utilization protein [Escherichia coli E24377A],...	5.0E-46	[1..116]	[1..116]
gi\|77959306 - gi\|77959306\|ref\|ZP_00823327.1\| COG4810: Ethanolamine utilization protein [Yersinia bercovieri ATCC 4... gi\|77962440 - gi\|77962440\|ref\|ZP_00826260.1\| COG4810: Ethanolamine utilization protein [Yersinia mollaretii ATCC 4... gi\|77977297 - gi\|77977297\|ref\|ZP_00832749.1\| COG4810: Ethanolamine utilization protein [Yersinia intermedia ATCC 2...	5.0E-46	[1..116]	[2..117]
gi\|126699518, gi... - gi\|126699518\|ref\|YP_001088415.1\| putative ethanolamine/propanediol utilization protein [Clostridium ... gi\|255306898 - gi\|255306898\|ref\|ZP_05351069.1\| putative ethanolamine/propanediol utilization protein [Clostridium d... gi\|255101034 - gi\|255101034\|ref\|ZP_05330011.1\| putative ethanolamine/propanediol utilization protein [Clostridium d...	1.0E-45	[4..116]	[3..116]
gi\|77975844 - gi\|77975844\|ref\|ZP_00831378.1\| COG4810: Ethanolamine utilization protein [Yersinia frederiksenii ATC...	2.0E-45	[1..116]	[2..117]
gi\|177909755, gi... - gi\|182624958\|ref\|ZP_02952736.1\| ethanolamine utilization protein EutS [Clostridium perfringens D str... gi\|169296913, gi... - gi\|169346854\|ref\|ZP_02865802.1\| ethanolamine utilization protein EutS [Clostridium perfringens C str... gi\|182381966, gi... - gi\|182381966\|gb\|EDT79445.1\| ethanolamine utilization protein EutS [Clostridium perfringens NCTC 8239... gi\|170712669, gi... - gi\|170712669\|gb\|EDT24851.1\| ethanolamine utilization protein EutS [Clostridium perfringens B str. AT... gi\|18144553, gi\|... - gi\|18309875\|ref\|NP_561809.1\| propanediol utilization protein [Clostridium perfringens str. 13], gi\|1... gi\|110675898, gi... - gi\|110801251\|ref\|YP_695335.1\| ethanolamine utilization protein EutS [Clostridium perfringens ATCC 13... gi\|168204919, gi... - gi\|170663452\|gb\|EDT16135.1\| ethanolamine utilization protein EutS [Clostridium perfringens E str. JG...	9.0E-45	[4..116]	[3..116]
gi\|28211790, gi\|... - gi\|28211790\|ref\|NP_782734.1\| ethanolamine utilization protein eutS [Clostridium tetani E88], gi\|2820...	2.0E-44	[5..116]	[5..117]
gi\|29335736 - gi\|29335736\|emb\|CAD83155.1\| PduU protein [Lactobacillus collinoides]	2.0E-44	[8..116]	[6..114]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERQPTTDRM IQEYVPGKQV TLAHLIANPG KDLFKKLGLQ DAVSAIGILT ITPSEASIIA  60
   61 CDIATKSGAV EIGFLDRFTG AVVLTGDVSA VEYALKQVTR TLGEMMQFTT CSITRT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.23
Match:	2ewhA
Description:	No description for 2ewhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits