YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|161365525, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|161365525, gi....

Description	E-value	Query Range	Subject Range
gi\|27362190, gi\|... - gi\|27365990\|ref\|NP_761518.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio vulnificus CMCP6...	4.0E-54	[1..244]	[1..244]
gi\|59479110, gi\|... - gi\|59711009\|ref\|YP_203785.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio fischeri ES114],...	6.0E-54	[1..242]	[12..253]
gi\|187427731, gi... - gi\|75178922\|ref\|ZP_00698958.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella boy... gi\|75187837, gi\|... - gi\|75187837\|ref\|ZP_00701104.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|75239402, gi\|... - gi\|75239402\|ref\|ZP_00723373.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|190907173, gi... - gi\|75240525\|ref\|ZP_00724453.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|75212340, gi\|... - gi\|75212340\|ref\|ZP_00712364.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|75229298, gi\|... - gi\|75229298\|ref\|ZP_00715857.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|24114323, gi\|... - gi\|24114323\|ref\|NP_708833.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella flexneri 2a st... gi\|25347003, gi\|... - pir\|\|F91116 1-acyl-sn-glycerol-3-phosphate acyltransferase [imported] - Escherichia coli (strain O15... gi\|91074010, gi\|... - gi\|91212436\|ref\|YP_542422.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli UTI89]... gi\|30042628, gi\|... - gi\|30064371\|ref\|NP_838542.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella flexneri 2a st... gi\|13363374, gi\|... - gi\|15833156\|ref\|NP_311929.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H... gi\|26249589, gi\|... - gi\|26249589\|ref\|NP_755629.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli CFT073... gi\|110643261, gi... - gi\|110643261\|ref\|YP_670991.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli 536],... gi\|12517587, gi\|... - gi\|15803562\|ref\|NP_289595.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H... gi\|13363374, gi\|... - gi\|15833156\|ref\|NP_311929.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H... gi\|110806915, gi... - gi\|110806915\|ref\|YP_690435.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella flexneri 5 st... gi\|227887729, gi... - gi\|227887729\|ref\|ZP_04005534.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli 839... gi\|168747475, gi... - gi\|188017834\|gb\|EDU55956.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|226899270, gi... - gi\|237706230\|ref\|ZP_04536711.1\| 1-acyl-glycerol-3-phosphate acyltransferase [Escherichia sp. 3_2_53F... gi\|251786297, gi... - gi\|251786297\|ref\|YP_003000601.1\| hypothetical protein B21_02840 [Escherichia coli BL21], gi\|24237857... gi\|168760176, gi... - gi\|189369340\|gb\|EDU87756.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|253979024, gi... - gi\|254289717\|ref\|YP_003055465.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli BL... gi\|168753985, gi... - gi\|189358658\|gb\|EDU77077.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|254162967, gi... - gi\|254162967\|ref\|YP_003046075.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli B ... gi\|187770791, gi... - gi\|187770791\|gb\|EDU34635.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|254594372, gi... - gi\|254794972\|ref\|YP_003079809.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O1... gi\|168767038, gi... - gi\|189363644\|gb\|EDU82063.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|189373863, gi... - gi\|189373863\|gb\|EDU92279.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|189000524, gi... - gi\|189000524\|gb\|EDU69510.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|115514450, gi... - gi\|117625326\|ref\|YP_854528.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli APEC ... gi\|217327667, gi... - gi\|217327667\|ref\|ZP_03443750.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|215266420, gi... - gi\|215488348\|ref\|YP_002330779.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O1... gi\|218560097, gi... - gi\|218560097\|ref\|YP_002393010.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli S8... gi\|218362358, gi... - gi\|218555590\|ref\|YP_002388503.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli IA... gi\|218371775, gi... - gi\|218701789\|ref\|YP_002409418.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli IA... gi\|218428880, gi... - gi\|218691316\|ref\|YP_002399528.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli ED... gi\|73857037, gi\|... - gi\|74313560\|ref\|YP_311979.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella sonnei Ss046],... gi\|170681677, gi... - gi\|170681677\|ref\|YP_001745288.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli SM... gi\|81246690, gi\|... - gi\|82545279\|ref\|YP_409226.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella boydii Sb227],... gi\|168797607, gi... - gi\|189379610\|gb\|EDU98026.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O157:H7... gi\|193061980, gi... - gi\|75259960\|ref\|ZP_00731238.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|208728399, gi... - gi\|208808598\|ref\|ZP_03250935.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|75515188, gi\|... - gi\|75515188\|ref\|ZP_00737372.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|195937162 - gi\|195937162\|ref\|ZP_03082544.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|208739014, gi... - gi\|208818891\|ref\|ZP_03259211.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|208812139, gi... - gi\|208812139\|ref\|ZP_03253468.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O15... gi\|209913751, gi... - gi\|209920492\|ref\|YP_002294576.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli SE... gi\|209159802, gi... - gi\|209398402\|ref\|YP_002272494.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli O1...	9.0E-54	[1..245]	[1..245]
gi\|69250181, gi\|... - gi\|69250181\|ref\|ZP_00605117.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Enterococcus faecium ... PLSC_ECOLI - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) (1-AGP acyltransferase) (1-AGPAT) (Lyso... gi\|85675821, gi\|... - gi\|89109788\|ref\|AP_003568.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli str. K... EG11377 - 1-acyl-sn-glycerol-3-phosphate acyltransferase / 1-Acyl-n-glycerol-3-phosphate acyltransferase; affe... gi\|124502171, gi... - gi\|124526067\|ref\|ZP_01698072.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferases [Escherichia coli B]... gi\|238902131, gi... - gi\|238902131\|ref\|YP_002927927.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli BW... gi\|194436871, gi... - gi\|83587538\|ref\|ZP_00926165.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|254038187, gi... - gi\|254038187\|ref\|ZP_04872245.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia sp. 1_1_... gi\|157068174, gi... - gi\|75196978\|ref\|ZP_00707048.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia ... gi\|170082561, gi... - gi\|170082561\|ref\|YP_001731881.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli st... gi\|170018728, gi... - gi\|170018728\|ref\|YP_001723682.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli AT... gi\|218706644, gi... - gi\|218706644\|ref\|YP_002414163.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Escherichia coli UM... EG11377 - 1-acyl-sn-glycerol-3-phosphate acyltransferase / 1-Acyl-n-glycerol-3-phosphate acyltransferase; affe...	1.0E-53	[1..245]	[1..245]
gi\|82778370, gi\|... - gi\|82778370\|ref\|YP_404719.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Shigella dysenteriae Sd...	1.0E-53	[1..245]	[1..245]
gi\|49609831, gi\|... - gi\|50119305\|ref\|YP_048472.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Pectobacterium atrosept...	4.0E-52	[1..244]	[1..244]
gi\|52424565, gi\|... - gi\|52424565\|ref\|YP_087702.1\| PlsC protein [Mannheimia succiniciproducens MBEL55E], gi\|52306617\|gb\|AA...	1.0E-51	[1..238]	[1..238]
gi\|84377500, gi\|... - gi\|84387655\|ref\|ZP_00990672.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio splendidus 12B...	1.0E-51	[1..243]	[1..243]
gi\|91225573, gi\|... - gi\|91225573\|ref\|ZP_01260647.1\| 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio alginolyticus ... gi\|254229288, gi... - gi\|75856340\|ref\|ZP_00763970.1\| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase [Vibrio sp. E...	2.0E-51	[1..242]	[1..241]
gi\|12720314, gi\|... - gi\|15601968\|ref\|NP_245040.1\| hypothetical protein PM0103 [Pasteurella multocida subsp. multocida str...	3.0E-51	[1..238]	[1..238]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYIFRLIVT VIYSILVCVF GSIYCLFSPR NPKHVATFGH MFGRLAPLFG LKVECRKPAD  60
   61 AENYGNAIYI ANHQNNYDMV TAANIVQPPT VTVGKKSLLW IPFFGQLYWL TGNLLIDRNN 120
  121 RAKAHSTIAA VVNHFKKRRI SIWMFPEGTR SRGRGLLPFK TGAFHAAIAA GVPIIPVCVS 180
  181 NTSNKVNLNR LNNGLVIVEM LPPVDVSEYG KDQVRELAAH CRALMEQKIA ELDKEVAERE 240
  241 ATGKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	1iuqA
Description:	The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits