YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213052661
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	629 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052661.

Description	E-value	Query Range	Subject Range
gi\|208727143, gi... - gi\|208807342\|ref\|ZP_03249679.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Es... MNMG_ECO57 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O157:H7 GN=mnmG... gi\|12518598, gi\|... - gi\|15804341\|ref\|NP_290380.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Esche... gi\|195936368 - gi\|195936368\|ref\|ZP_03081750.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Es... gi\|189373258, gi... - gi\|189373258\|gb\|EDU91674.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Escher... gi\|189358928, gi... - gi\|189358928\|gb\|EDU77347.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Escher... gi\|217326532, gi... - gi\|217326532\|ref\|ZP_03442616.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Es... gi\|15833937, gi\|... - gi\|15833937\|ref\|NP_312710.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Esche... MNMG_ECO5E - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O157:H7 (strain... gi\|208735700, gi... - gi\|208814423\|ref\|ZP_03255752.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Es... gi\|254595147, gi... - gi\|254795747\|ref\|YP_003080584.1\| glucose-inhibited cell-division protein [Escherichia coli O157:H7 s... gi\|209753798, gi... - pir\|\|D86060 glucose-inhibited division protein gidA [similarity] - Escherichia coli (strain O157:H7,...	0.0	[1..629]	[1..629]
gi\|193071616, gi... - gi\|75214824\|ref\|ZP_00713309.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio...	0.0	[1..629]	[1..629]
gi\|226838925, gi... - gi\|254038960\|ref\|ZP_04873012.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Es... MNMG_ECOBW - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain K12 / M... gi\|227883963, gi... - gi\|227883963\|ref\|ZP_04001768.1\| glucose inhibited cell division protein A [Escherichia coli 83972], ... MNMG_ECOLC - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain ATCC 87... MNMG_ECODH - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain K12 / D... EG10375 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34 / 5-methylaminomethyl-2-thiouridine modif... MNMG_ECO24 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O139:H28 (strai... MNMG_ECOSE - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain SE11) G... MNMG_ECOHS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O9:H4 (strain H... MNMG_ECO8A - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O8 (strain IAI1... gi\|194428129, gi... - gi\|75210649\|ref\|ZP_00710790.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... MNMG_ECO81 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O81 (strain ED1... gi\|191170517, gi... - gi\|75242471\|ref\|ZP_00726215.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... MNMG_ECO55 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain 55989 /... gi\|75258280, gi\|... - gi\|75258280\|ref\|ZP_00729728.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... MNMG_ECO7I - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O7:K1 (strain I... gi\|188488625, gi... - gi\|75514193\|ref\|ZP_00736501.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... MNMG_ECOLU - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O17:K52:H18 (st... MNMG_SHIBS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Shigella boydii serotype 4 (stra... gi\|89110266, gi\|... - gi\|89110266\|ref\|AP_004046.1\| glucose-inhibited cell-division protein [Escherichia coli str. K-12 sub... GIDA_ECOLI - tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA (Glucose-inhibited division protein... EG10375 - 5-methylaminomethyl-2-thiouridine modification at tRNA U34 / 5-methylaminomethyl-2-thiouridine modif... GIDA_ECOL6, MNMG... - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O6 GN=mnmG PE=3... MNMG_ECOL6 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O6:H1 (strain C... gi\|124530045, gi... - gi\|124530045\|ref\|ZP_01700828.1\| glucose inhibited division protein A [Escherichia coli B], gi\|124499... MNMG_ECOL5 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O6:K15:H31 (str...	0.0	[1..629]	[1..629]
gi\|254163692, gi... - gi\|254163692\|ref\|YP_003046800.1\| glucose-inhibited division protein A [Escherichia coli B str. REL60... gi\|83588394, gi\|... - gi\|83588394\|ref\|ZP_00927018.1\| COG0445: NAD/FAD-utilizing enzyme apparently involved in cell divisio... gi\|253326668, gi... - gi\|254290443\|ref\|YP_003056191.1\| glucose-inhibited division protein A [Escherichia coli BL21(DE3)], ... gi\|242379279, gi... - gi\|251787006\|ref\|YP_003001310.1\| hypothetical protein B21_03569 [Escherichia coli BL21], gi\|24237927...	0.0	[1..629]	[1..629]
gi\|237703542, gi... - gi\|237703542\|ref\|ZP_04534023.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG [Es... MNMG_ECOUT - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli (strain UTI89 /... MNMG_ECO45 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O45:K1 (strain ... MNMG_ECOK1 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Escherichia coli O1:K1 / APEC GN...	0.0	[1..629]	[1..629]
MNMG_SHISS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Shigella sonnei (strain Ss046) G...	0.0	[1..629]	[1..629]
MNMG_SHIB3 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Shigella boydii serotype 18 (str...	0.0	[1..629]	[1..629]
MNMG_SHIFL - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Shigella flexneri GN=mnmG PE=3 S... MNMG_SHIF8 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Shigella flexneri serotype 5b (s... gi\|24115044, gi\|... - gi\|24115044\|ref\|NP_709554.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Shige... gi\|30043215, gi\|... - gi\|30064954\|ref\|NP_839125.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Shige...	0.0	[1..629]	[1..629]
MNMG_SHIDS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Shigella dysenteriae serotype 1 ...	0.0	[1..629]	[1..629]
gi\|204322080, gi... - gi\|204928647\|ref\|ZP_03219846.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Sa... gi\|200388594, gi... - gi\|200388594\|ref\|ZP_03215206.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Sa... gi\|238913127 - gi\|238913127\|ref\|ZP_04656964.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Sa... GIDA_SALTY, MNMG... - tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG OS=Salmonella typhimurium GN=mnmG P... gi\|194456753, gi... - gi\|194470389\|ref\|ZP_03076373.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Sa... MNMG_SALTY - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Salmonella typhimurium (strain L... MNMG_SALHS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Salmonella heidelberg (strain SL... gi\|197265255, gi... - gi\|197265255\|ref\|ZP_03165329.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Sa... MNMG_SALA4 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Salmonella agona (strain SL483) ... gi\|168464788, gi... - gi\|195632101\|gb\|EDX50585.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Salmon... gi\|168263227, gi... - gi\|205348292\|gb\|EDZ34923.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Salmon... MNMG_SALNS - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Salmonella newport (strain SL254... gi\|205340555, gi... - gi\|205340555\|gb\|EDZ27319.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Salmon... gi\|167994881, gi... - gi\|205327320\|gb\|EDZ14084.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Salmon... gi\|168245184, gi... - gi\|205336051\|gb\|EDZ22815.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Salmon... gi\|205331678, gi... - gi\|205331678\|gb\|EDZ18442.1\| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Salmon... MNMG_SALTY - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Salmonella typhimurium GN=mnmG P... lcl\|NC_016856.1_... - [gene=gidA] [protein=tRNA uridine 5-carboxymethylaminomethyl modification protein GidA] [protein_id=...	0.0	[1..629]	[1..629]

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Predicted Domain #1

Region A:
Residues: [1-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYQDPFDVI IIGGGHAGTE AAMAAARMGQ QTLLLTHNID TLGQMSCNPT IGGIGKGHLV  60
   61 KEVDALGGLM AKAIDQAGIQ FKILNASKGP AVRATRAQAD RVLYRQAVRI ALENQPNLMI 120
  121 FQQAVEDLIV ENDRVVGAVT QMGLKFRAKA VVLTVGTFLD GKIHIGLDNY SGGRAGDPPS 180
  181 IPLSRRLREL PLRVSRLKTG TPPRIDARTI DFSVLAQQHG DNPMPVFSFM GNAFQHPQQV 240
  241 PCYITHTNEK THDVIRNNLD RSPMYAGVIE GIGPRYCPSI EDKVMRFADR NQHQIFLEPE 300
  301 GLTSNEIYPN GISTSLPFDV QMQIVRSMQG MENAKIVRPG YAIEYDFFDP RDLKPTLESK 360
  361 FIHGLFFAGQ INGTTGYEEA AAQGLLAGLN AARLSADKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.30103
Match:	2i0zA
Description:	No description for 2i0zA was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	4.24087829378489	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	2.84060092432585	bayes_pls_golite062009
catalytic activity	1.56773888754354	bayes_pls_golite062009
antioxidant activity	1.49429830917872	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.39990343076756	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.14701726867934	bayes_pls_golite062009
binding	0.400596507621048	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	0.36771673037999	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	0.187016999137115	bayes_pls_golite062009
protein binding	0.139858531143419	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [400-629]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GWAPARSQAY LGVLVDDLCT LGTKEPYRMF TSRAEYRLML REDNADLRLT EMGRELGLVD  60
   61 DERWARFNEK LENIERERQR LKSTWVTPSA ESADEVNAHL TTPLSREASG EDLLRRPEMT 120
  121 YAQLTSLAAF APALEDEQAA EQVEIQVKYE GYIARQQDEI EKQLRNENTL LPATLDYRQV 180
  181 SGLSNEVIAK LNDHKPASIG QASRISGVTP AAISILLVWL KKQGMLRRSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.804	N/A	N/A	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: