YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190405957
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405957.

Description	E-value	Query Range	Subject Range
gi\|151944125 - gi\|151944125\|gb\|EDN62418.1\| sed5 vesicle protein [Saccharomyces cerevisiae YJM789] gi\|190405957 - gi\|190405957\|gb\|EDV09224.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207344511 - gi\|207344511\|gb\|EDZ71631.1\| YHR181Wp-like protein [Saccharomyces cerevisiae AWRI1631] SVP26 - Integral membrane protein of the early Golgi apparatus and endoplasmic reticulum, involved in COP II... ORFP:9703 - YHR181W, Contig c31 3547-4233 reverse complement SVP26_YEAST - Protein SVP26 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SVP26 PE=1 SV=1	2.0E-82	[1..228]	[1..228]
SPCC1795.10c - Sed5 Vesicle Protein Svp26 SVP26_SCHPO - Protein svp26 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=svp26 PE=3 SV=1	3.0E-56	[1..168]	[2..174]
TX261_RAT - Protein TEX261 OS=Rattus norvegicus GN=Tex261 PE=2 SV=1 TX261_MOUSE - Protein TEX261 OS=Mus musculus GN=Tex261 PE=2 SV=1	2.0E-53	[3..191]	[4..171]
gi\|18446873 - gi\|18446873\|gb\|AAL68029.1\| AT03803p [Drosophila melanogaster]	8.0E-48	[2..194]	[3..178]
gi\|6473424 - gi\|6473424\|dbj\|BAA87131.1\| Hypothetical protein [Schizosaccharomyces pombe]	1.0E-44	[28..168]	[1..146]
gi\|1809329 - gi\|1809329\|gb\|AAB41674.1\| steroidogenic acute regulatory protein [Rattus norvegicus]	1.0E-33	[47..148]	[1..86]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-33	[47..148]	[1..86]
gi\|19069565, gi\|... - gi\|19074840\|ref\|NP_586346.1\| similarity to HYPOTHETICAL PROTEIN YHY1_yeast [Encephalitozoon cuniculi... gi\|19074840 - gi\|19074840\|ref\|NP_586346.1\| similarity to HYPOTHETICAL PROTEIN YHY1_yeast [Encephalitozoon cuniculi...	0.001	[5..166]	[9..149]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLELISYAG TVSGFLFLTL SIASGLYYIS ELVEEHTEPT RRFLTRAIYG IILILILLLL  60
   61 LDGFPFKLTL FSIACYIVYY QNLKSFPFIS LTSPTFLLSC VCVVLNHYFW FKYFNDTEVP 120
  121 PQFKFDPNYI PRRRASFAEV ASFFGICVWF IPFALFVSLS AGDYVLPTTS EQHMAKKNDD 180
  181 ITTNNQPKFR KRAVGLARVV INSVRKYIYS LARVFGYEIE PDFDRLAV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits