YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189023886, gi...
Organism:	Brucella abortus S19
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189023886, gi....

Description	E-value	Query Range	Subject Range
gi\|186683677, gi... - gi\|53686882\|ref\|ZP_00106310.2\| COG2135: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	306.0	[0..1]	[232..1]
gi\|17230686, gi\|... - gi\|17230686\|ref\|NP_487234.1\| hypothetical protein all3194 [Nostoc sp. PCC 7120], gi\|17132289\|dbj\|BAB... gi\|25347072 - pir\|\|AC2205 hypothetical protein all3194 [imported] - Nostoc sp. (strain PCC 7120)	304.0	[0..1]	[232..1]
gi\|15888401, gi\|... - gi\|17934966\|ref\|NP_531756.1\| hypothetical protein Atu1059 [Agrobacterium tumefaciens str. C58], gi\|1... gi\|25347068, gi\|... - pir\|\|AB2707 conserved hypothetical protein Atu1059 [imported] - Agrobacterium tumefaciens (strain C5...	303.0	[0..1]	[259..1]
gi\|45508692, gi\|... - gi\|75910096\|ref\|YP_324392.1\| hypothetical protein Ava_3892 [Anabaena variabilis ATCC 29413], gi\|7570...	301.0	[0..1]	[232..1]
gi\|221314277 - gi\|221314277\|ref\|ZP_03596082.1\| hypothetical protein BsubsN3_11232 [Bacillus subtilis subsp. subtili... gi\|221319199 - gi\|221319199\|ref\|ZP_03600493.1\| hypothetical protein BsubsJ_11158 [Bacillus subtilis subsp. subtilis... YOQW_BACSU - UPF0361 protein yoqW OS=Bacillus subtilis GN=yoqW PE=3 SV=1 YOQW_BPSPB - Putative SOS response-associated peptidase yoqW OS=Bacillus phage SPbeta GN=yoqW PE=3 SV=1 YOQW_BACSU - Putative SOS response-associated peptidase YoqW OS=Bacillus subtilis (strain 168) GN=yoqW PE=3 SV=1 gi\|221323475 - gi\|221323475\|ref\|ZP_03604769.1\| hypothetical protein BsubsS_11287 [Bacillus subtilis subsp. subtilis...	300.0	[0..1]	[227..1]
gi\|13476468, gi\|... - gi\|14027229\|dbj\|BAB54183.1\| mlr7795 [Mesorhizobium loti MAFF303099], gi\|13476468\|ref\|NP_108038.1\| hy...	297.0	[0..1]	[259..117]
gi\|94970917, gi\|... - gi\|94970917\|ref\|YP_592965.1\| hypothetical protein Acid345_3891 [Candidatus Koribacter versatilis Ell...	296.0	[0..1]	[238..1]
gi\|56379871, gi\|... - gi\|56420029\|ref\|YP_147347.1\| hypothetical protein GK1494 [Geobacillus kaustophilus HTA426], gi\|56379...	288.0	[0..1]	[236..1]
gi\|26449484, gi\|... - gi\|30683129\|ref\|NP_180215.2\| unknown protein [Arabidopsis thaliana], gi\|29028900\|gb\|AAO64829.1\| At2g...	288.0	[0..1]	[253..1]
gi\|90425797, gi\|... - gi\|90425797\|ref\|YP_534167.1\| hypothetical protein RPC_4325 [Rhodopseudomonas palustris BisB18], gi\|9...	287.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGRFSLTAS RQELETLFGA LIAEDFPPRY NIAPTQPILA ILAGETPPPG SNRPDRIAML  60
   61 VRWGFVPAWV KDPNDWPLMF NIRSETAAEK NSFKAALSHR RALVPASGFY EWRREGRNKS 120
  121 QAYWVRPRNG GVVAFGALME TWSSADGSQI DTAGILTTSA NGLLQPIHER MPVVVQPEDY 180
  181 RRWLDCKQFL AREVADIMRP VQDDFFEAIP VSGKVNKVAN TSPDLQERVT EDLTQGQPQP 240
  241 KRKKGPEPEE DSGGQLSMF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.39794
Match:	2icuA
Description:	No description for 2icuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits