YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|199604530, gi...
Organism:	Salmonella enterica subsp. enterica serovar Virchow str. SL491
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|199604530, gi....

Description	E-value	Query Range	Subject Range
gi\|21958273, gi\|... - gi\|22125388\|ref\|NP_668811.1\| cell division protein ZipA [Yersinia pestis KIM], gi\|21958273\|gb\|AAM850... gi\|45437256, gi\|... - gi\|45442392\|ref\|NP_993931.1\| cell division protein ZipA [Yersinia pestis biovar Microtus str. 91001]...	3.0E-68	[1..327]	[14..338]
gi\|229838582, gi... - gi\|229838582\|ref\|ZP_04458741.1\| cell division protein involved in Z ring assembly [Yersinia pestis b... ZIPA_YERPE - Cell division protein ZipA OS=Yersinia pestis GN=zipA PE=3 SV=1 gi\|229687550, gi... - gi\|229899148\|ref\|ZP_04514291.1\| cell division protein involved in Z ring assembly [Yersinia pestis b... gi\|149365145, gi... - gi\|149365145\|ref\|ZP_01887180.1\| putative cell division protein [Yersinia pestis CA88-4125], gi\|14929... ZIPA_YERPP - Cell division protein ZipA OS=Yersinia pestis (strain Pestoides F) GN=zipA PE=3 SV=1 gi\|165926939, gi... - gi\|165926939\|ref\|ZP_02222771.1\| cell division protein ZipA [Yersinia pestis biovar Orientalis str. F... ZIPA_YERPG - Cell division protein ZipA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=zipA PE=3 SV=1 ZIPA_YERPA - Cell division protein ZipA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=zipA PE=3 SV=1 ZIPA_YERPY - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=zipA PE=3 S... gi\|167399701, gi... - gi\|167399701\|ref\|ZP_02305225.1\| cell division protein ZipA [Yersinia pestis biovar Antiqua str. UG05... ZIPA_YERPS - Cell division protein ZipA homolog OS=Yersinia pseudotuberculosis GN=zipA PE=3 SV=1 ZIPA_YERPB - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=zipA PE=3 SV... gi\|77629761 - gi\|77629761\|ref\|ZP_00792347.1\| COG3115: Cell division protein [Yersinia pseudotuberculosis IP 31758] ZIPA_YERPS - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=zipA PE=3 S... ZIPA_YERPN - Cell division protein ZipA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=zipA PE=3 SV=1 gi\|16123171, gi\|... - gi\|218930039\|ref\|YP_002347914.1\| cell division protein ZipA [Yersinia pestis CO92], gi\|16123171\|ref\|...	2.0E-67	[1..327]	[1..325]
gi\|77634536 - gi\|77634536\|ref\|ZP_00796634.1\| COG3115: Cell division protein [Yersinia pestis Angola] ZIPA_YERP3 - Cell division protein ZipA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=zipA PE... gi\|167421339, gi... - gi\|167421339\|ref\|ZP_02313092.1\| cell division protein ZipA [Yersinia pestis biovar Orientalis str. M... gi\|167056442, gi... - gi\|167424560\|ref\|ZP_02316313.1\| cell division protein ZipA [Yersinia pestis biovar Mediaevalis str. ... gi\|166011198, gi... - gi\|166011198\|ref\|ZP_02232096.1\| cell division protein ZipA [Yersinia pestis biovar Antiqua str. E197... gi\|166212449, gi... - gi\|166212449\|ref\|ZP_02238484.1\| cell division protein ZipA [Yersinia pestis biovar Antiqua str. B420...	1.0E-66	[2..327]	[1..324]
ZIPA_VIBPA - Cell division protein ZipA homolog OS=Vibrio parahaemolyticus GN=zipA PE=3 SV=1 ZIPA_VIBPA - Cell division protein ZipA OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=zipA P...	9.0E-66	[2..328]	[1..316]
ZIPA_VIBVY - Cell division protein ZipA OS=Vibrio vulnificus (strain YJ016) GN=zipA PE=3 SV=1	3.0E-64	[2..328]	[1..311]
ZIPA_VIBVU - Cell division protein ZipA OS=Vibrio vulnificus (strain CMCP6) GN=zipA PE=3 SV=1 ZIPA_VIBVU - Cell division protein ZipA homolog OS=Vibrio vulnificus GN=zipA PE=3 SV=1	6.0E-64	[2..328]	[1..311]
gi\|91225891, gi\|... - gi\|91225891\|ref\|ZP_01260860.1\| cell division protein ZipA [Vibrio alginolyticus 12G01], gi\|91189541\|...	8.0E-63	[2..328]	[1..318]
gi\|151937779, gi... - gi\|75853524\|ref\|ZP_00761353.1\| COG3115: Cell division protein [Vibrio sp. Ex25], gi\|254229734\|ref\|ZP...	9.0E-63	[2..328]	[1..318]
ZIPA_SODGM - Cell division protein ZipA OS=Sodalis glossinidius (strain morsitans) GN=zipA PE=3 SV=1	2.0E-62	[1..328]	[1..327]
gi\|77960934 - gi\|77960934\|ref\|ZP_00824786.1\| COG3115: Cell division protein [Yersinia mollaretii ATCC 43969]	2.0E-62	[2..328]	[1..319]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQDLRLILI IVGAIAIIAL LVHGFWTSRK ERSSMFRDRP LKRMKSKRDD DSYDDDVEED  60
   61 EGVGEVRVHR VNHAPGQSQE HDAPRQSPQH QYQPPYASAQ PRPAAPPQPQ APMQQPVQQP 120
  121 VQPAPQPQQV QPSAPPVQPP QQQPAPPSQA PQPVAQPAPP PSAQTFQPAE PVVEAEPVVE 180
  181 EAPV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.0
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [185-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEKPQRKEAV IIMNVAAHHG SELNGEVLLN SIQQSGFKFG DMNIFHRHLS PDGSGPALFS  60
   61 LANMVNPGTF DPEMTDFTTP GVTIFMQVPS YGDALQNFKL MLQSAQHIAD EVGGVVLDDQ 120
  121 RRMMTPQKLR EYQDRIREVM DANA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	1y2gA
Description:	Crystal STructure of ZipA in complex with an inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits