YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190405056
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190405056.

Description	E-value	Query Range	Subject Range
gi\|49527596, gi\|... - gi\|50291703\|ref\|XP_448284.1\| unnamed protein product [Candida glabrata], gi\|49527596\|emb\|CAG61245.1\|... gi\|49527596 - gi\|49527596\|emb\|CAG61245.1\| unnamed protein product [Candida glabrata]	140.0	[0..1]	[95..1]
gi\|50309091, gi\|... - gi\|50309091\|ref\|XP_454551.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643686\|emb\|CAG9963... gi\|49643686 - gi\|49643686\|emb\|CAG99638.1\| KLLA0E13355p [Kluyveromyces lactis]	137.0	[0..1]	[95..1]
MRP10_ASHGO - 37S ribosomal protein MRP10, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC... MRP10_ASHGO - 40S ribosomal protein MRP10, mitochondrial OS=Ashbya gossypii GN=MRP10 PE=3 SV=1	133.0	[0..1]	[95..1]
MRP10_SCHPO - 37S ribosomal protein mrp10, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN... mrp10 - mitochondrial ribosomal protein subunit Mrp10	120.0	[0..5]	[85..8]
gi\|49655545 - gi\|49655545\|emb\|CAG88118.1\| DEHA2E13156p [Debaryomyces hansenii] gi\|50422611, gi\|... - gi\|50422611\|ref\|XP_459877.1\| hypothetical protein DEHA0E13750g [Debaryomyces hansenii CBS767], gi\|49...	87.0	[0..9]	[95..11]
gi\|111065088, gi... - gi\|169606658\|ref\|XP_001796749.1\| hypothetical protein SNOG_06377 [Phaeosphaeria nodorum SN15], gi\|11...	78.0	[0..10]	[94..18]
gi\|145015522, gi... - gi\|39963052\|ref\|XP_364853.1\| hypothetical protein MGG_09698 [Magnaporthe grisea 70-15], gb\|EAA49707....	71.0	[0..1]	[91..1]
gi\|159130665 - gi\|159130665\|gb\|EDP55778.1\| 37S ribosomal protein Mrp10, mitochondrial [Aspergillus fumigatus A1163] gi\|70990678, gi\|... - gi\|70990678\|ref\|XP_750188.1\| 37S ribosomal protein Mrp10, mitochondrial [Aspergillus fumigatus Af293...	70.0	[0..9]	[91..14]
gi\|115390895, gi... - gi\|115390895\|ref\|XP_001212952.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	70.0	[0..9]	[91..14]
gi\|46137995, gi\|... - gi\|46137995\|ref\|XP_390688.1\| hypothetical protein FG10512.1 [Gibberella zeae PH-1], gi\|42546941\|gb\|E...	69.0	[0..1]	[91..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKPPVYRL PPLPRLKVKK PIIRQEANKC LVLMSNLLQC WSSYGHMSPK CAGLVTELKS  60
   61 CTSESALGKR NNVQKSNINY HAARLYDRIN GKPHD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits