YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213161459
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	315 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213161459.

Description	E-value	Query Range	Subject Range
FMT_SHIDS - Methionyl-tRNA formyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fmt PE=3 SV=1	0.0	[1..315]	[1..315]
FMT_SHISS - Methionyl-tRNA formyltransferase OS=Shigella sonnei (strain Ss046) GN=fmt PE=3 SV=1	0.0	[1..315]	[1..315]
FMT_ECODH - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=fmt PE=3 SV=1 FMT_ECOHS - Methionyl-tRNA formyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=fmt PE=3 SV=1 gi\|85676754, gi\|... - gi\|89110723\|ref\|AP_004503.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [E... EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... FMT_ECOLI - Methionyl-tRNA formyltransferase (EC 2.1.2.9) - Escherichia coli EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... gi\|124498111, gi... - gi\|124532221\|ref\|ZP_01702159.1\| methionyl-tRNA formyltransferase [Escherichia coli B], gi\|124498111\|... gi\|194439996, gi... - gi\|83584646\|ref\|ZP_00923313.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli 101-1], g... FMT_ECOLC - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fmt P... FMT_ECOBW - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fmt PE=3 SV=1 gi\|242378814, gi... - gi\|251786541\|ref\|YP_003000845.1\| hypothetical protein B21_03089 [Escherichia coli BL21], gi\|24237881... gi\|253979272, gi... - gi\|254289965\|ref\|YP_003055713.1\| methionyl-tRNA formyltransferase [Escherichia coli BL21(DE3)], gi\|2... gi\|254038448, gi... - gi\|254038448\|ref\|ZP_04872504.1\| methionyl-tRNA formyltransferase [Escherichia sp. 1_1_43], gi\|226838... gi\|253975116, gi... - gi\|254163215\|ref\|YP_003046323.1\| methionyl-tRNA formyltransferase [Escherichia coli B str. REL606], ...	0.0	[1..314]	[1..314]
gi\|193066482, gi... - gi\|75255414\|ref\|ZP_00727226.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli E22], gi\|... gi\|194430290, gi... - gi\|75208438\|ref\|ZP_00708767.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli B171], gi... FMT_ECO27 - Methionyl-tRNA formyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fmt PE=3 SV... FMT_ECO55 - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=fmt PE=3 SV=1 sp\|B7UK11\|FMT_ECO27 - Methionyl-tRNA formyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fmt PE=3 SV...	0.0	[1..314]	[1..314]
gi\|254795224, gi... - gi\|254795224\|ref\|YP_003080061.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferas... FMT_ECO57 - Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7 GN=fmt PE=3 SV=3 gi\|25320684, gi\|... - pir\|\|E85993 hypothetical protein fmt [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|168758515, gi... - gi\|189354684\|gb\|EDU73103.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4401],... gi\|15803815, gi\|... - gi\|15803815\|ref\|NP_289849.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 EDL933], gi\|... gi\|217320751, gi... - gi\|217324530\|ref\|ZP_03440614.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. TW14... FMT_ECO5E - Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fmt PE=3 SV=1 gi\|208818701, gi... - gi\|208818701\|ref\|ZP_03259021.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|208733665, gi... - gi\|208812388\|ref\|ZP_03253717.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|188998872, gi... - gi\|188998872\|gb\|EDU67858.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4076],... gi\|168777855, gi... - gi\|187767010\|gb\|EDU30854.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4196],... gi\|189361852, gi... - gi\|189361852\|gb\|EDU80271.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4486],... gi\|189365130, gi... - gi\|189365130\|gb\|EDU83546.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4501],... gi\|208807557, gi... - gi\|208807557\|ref\|ZP_03249894.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC42... gi\|195939835 - gi\|195939835\|ref\|ZP_03085217.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|15833407, gi\|... - gi\|15833407\|ref\|NP_312180.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. Sakai],... gi\|168802717, gi... - gi\|189375352\|gb\|EDU93768.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC508], ... gi\|189374012, gi... - gi\|189374012\|gb\|EDU92428.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC869], ...	0.0	[1..314]	[1..314]
gi\|188487856, gi... - gi\|75511167\|ref\|ZP_00733879.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli 53638], g...	0.0	[1..314]	[1..314]
gi\|24114565, gi\|... - gi\|24114565\|ref\|NP_709075.1\| methionyl-tRNA formyltransferase [Shigella flexneri 2a str. 301], gi\|24... FMT_SHIF8 - Methionyl-tRNA formyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=fmt PE=3 SV=1 gi\|30064609, gi\|... - gi\|30064609\|ref\|NP_838780.1\| methionyl-tRNA formyltransferase [Shigella flexneri 2a str. 2457T], gi\|... FMT_SHIFL - Methionyl-tRNA formyltransferase OS=Shigella flexneri GN=fmt PE=3 SV=1	0.0	[1..314]	[1..314]
FMT_SHIBS - Methionyl-tRNA formyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=fmt PE=3 SV=1	0.0	[1..315]	[1..315]
gi\|190900661, gi... - gi\|75227394\|ref\|ZP_00714170.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli B7A], gi\|... FMT_ECO24 - Methionyl-tRNA formyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fmt PE=3 SV... FMT_ECO8A - Methionyl-tRNA formyltransferase OS=Escherichia coli O8 (strain IAI1) GN=fmt PE=3 SV=1	0.0	[1..314]	[1..314]
gi\|75214907, gi\|... - gi\|75214907\|ref\|ZP_00713386.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli E110019],...	0.0	[1..314]	[1..314]

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Predicted Domain #1

Region A:
Residues: [1-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSLRIIFA GTPDFAARHL DALLTSGHNI VGVFTQPDRP AGRGKKLMPS PVKVLAEEKG  60
   61 LPVFQPVSLR PQENQHLVAD LHADVMVVVA YGLILPKAVL DMPRLGCINV HGSLLPRWRG 120
  121 AAPIQRSLWA GDAETGVTIM QMDVGLDTGD MLYKLACPIT AEDTSGSLYN KLAELGPQGL 180
  181 ITTLKQLADG TATPEAQNEA LVTHAEKLSK EEARIDWSLS AAQLERCIRA FNPWPMSWLE 240
  241 IDGQPVKVWQ ASVIEDATQS LPGTILAATK QGIQVATGKG ILNLLSLQPA GKKAMSAQDL 300
  301 LNSRREWFIP GNRLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	1fmtA
Description:	Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methionyl-tRNA formyltransferase activity	5.51013755462273	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	5.19882604023997	bayes_pls_golite062009
ligase activity	2.41579019065074	bayes_pls_golite062009
methyltransferase activity	2.27572765999587	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	2.20102068445328	bayes_pls_golite062009
catalytic activity	2.16003793103722	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	1.99841214906509	bayes_pls_golite062009
transferase activity	1.01502594768782	bayes_pls_golite062009
DNA N-glycosylase activity	0.809924940479886	bayes_pls_golite062009
binding	0.752059276178195	bayes_pls_golite062009
nucleic acid binding	0.698214709916015	bayes_pls_golite062009
DNA binding	0.421388681127685	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	0.0567687847434473	bayes_pls_golite062009
hydrolase activity, hydrolyzing N-glycosyl compounds	0.0124799003650303	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: