YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|215448264
Organism:	Mycobacterium tuberculosis T85
Length:	344 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|215448264.

Description	E-value	Query Range	Subject Range
gi\|15828464 - gi\|15828464\|ref\|NP_302727.1\| putative cell division protein [Mycobacterium leprae TN] gi\|13093894, gi\|... - gi\|25400492\|pir\|\|H87247 probable cell division protein [imported] - Mycobacterium leprae, gi\|1309389... gi\|221230941, gi... - gi\|221230941\|ref\|YP_002504357.1\| putative cell division protein [Mycobacterium leprae Br4923], gi\|21...	276.0	[0..1]	[331..3]
PARB_MYCLE - Probable chromosome-partitioning protein parB OS=Mycobacterium leprae GN=parB PE=3 SV=1 PARB_MYCLE - Probable chromosome-partitioning protein ParB OS=Mycobacterium leprae (strain TN) GN=parB PE=3 SV=1	276.0	[0..1]	[331..1]
gi\|76782518, gi\|... - gi\|76782518\|ref\|ZP_00769723.1\| COG1475: Predicted transcriptional regulators [Mycobacterium tubercul...	266.0	[0..37]	[344..1]
gi\|118464564, gi... - gi\|118464564\|ref\|YP_884416.1\| ParB-like partition proteins [Mycobacterium avium 104], gi\|118165851\|g... gi\|41399275, gi\|... - gi\|41410441\|ref\|NP_963277.1\| hypothetical protein MAP4343c [Mycobacterium avium subsp. paratuberculo... gi\|254777654 - gi\|254777654\|ref\|ZP_05219170.1\| ParB-like partition proteins [Mycobacterium avium subsp. avium ATCC ...	266.0	[0..1]	[332..1]
gi\|108772784, gi... - gi\|108802365\|ref\|YP_642562.1\| chromosome segregation DNA-binding protein [Mycobacterium sp. MCS], gi... gi\|119692147, gi... - gi\|92913848\|ref\|ZP_01282476.1\| ParB-like partition protein [Mycobacterium sp. KMS], gi\|92441952\|gb\|E... gi\|92909278, gi\|... - gi\|92909278\|ref\|ZP_01278056.1\| ParB-like partition protein [Mycobacterium sp. JLS], gi\|92433740\|gb\|E...	266.0	[0..1]	[331..1]
gi\|90202214, gi\|... - gi\|90202214\|ref\|ZP_01204860.1\| ParB-like partition protein [Mycobacterium vanbaalenii PYR-1], gi\|901...	259.0	[0..1]	[331..1]
gi\|81252591 - gi\|81252591\|ref\|ZP_00877173.1\| COG1475: Predicted transcriptional regulators [Mycobacterium tubercul...	256.0	[0..56]	[344..1]
gi\|89319565, gi\|... - gi\|89340314\|ref\|ZP_01192586.1\| ParB-like partition protein [Mycobacterium flavescens PYR-GCK], gi\|89...	256.0	[0..1]	[335..1]
gi\|54019148, gi\|... - gi\|54027640\|ref\|YP_121882.1\| putative chromosome partitioning protein [Nocardia farcinica IFM 10152]...	248.0	[0..3]	[327..1]
gi\|38201174 - gi\|38201174\|emb\|CAE50898.1\| Putative chromosome partitioning protein [Corynebacterium diphtheriae] gi\|38234909 - gi\|38234909\|ref\|NP_940676.1\| putative chromosome partitioning protein [Corynebacterium diphtheriae N...	236.0	[0..1]	[334..1]

Back

Predicted Domain #1

Region A:
Residues: [1-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQPSRRKGG LGRGLAALIP TGPADGESGP PTLGPRMGSA TADVVIGGPV PDTSVMGAIY  60
   61 REIPPSAIEA NPRQPRQVFD EEALAELVHS IREFGLLQPI VVRSLAGSQT GVRYQIVMGE 120
  121 RRWRAAQEAG LATIPAIVRE TGDDNLLRDA LLENIHRVQL NPLEEAAAYQ QLLDEFGVTH 180
  181 DELAARIGRS RPLITNMIRL LKLPIPVQRR VAAGVLSAGH ARALLSLEAG PEAQEELASR 240
  241 IVAEGLSVRA TEETVTLANH EANRQAHHSD A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.30103
Match:	1vz0A
Description:	Chromosome segregation protein Spo0J from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.895085828217607	bayes_pls_golite062009
DNA binding	0.0408978596954372	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [272-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTPAPPRRKP IQMPGLQDVA ERLSTTFDTR VTVSLGKRKG KIVVEFGSVD DLARIVGLMT  60
   61 TDGRDKGLHR DAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.39794
Match:	2ntzA
Description:	No description for 2ntzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: