YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190409743
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190409743.

Description	E-value	Query Range	Subject Range
CYT2 - Cytochrome c1 heme lyase, involved in maturation of cytochrome c1, which is a subunit of the mitocho... gi\|207343541 - gi\|207343541\|gb\|EDZ70977.1\| YKL087Cp-like protein [Saccharomyces cerevisiae AWRI1631] CYT2_YEAST - Cytochrome c1 heme lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYT2 PE=3 SV=1 gi\|190409743 - gi\|190409743\|gb\|EDV13008.1\| cytochrome c1 heme lyase [Saccharomyces cerevisiae RM11-1a]	2.0E-96	[1..224]	[1..224]
cchl-1 - cyctochrome c1 heme lyase status:Confirmed UniProt:P53703 protein_id:CAA88969.1	2.0E-78	[1..224]	[27..264]
SPAC24C9.02c - cytochrome c1 heme lyase YE42_SCHPO - Putative cytochrome c1 heme lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24C9...	3.0E-69	[2..220]	[6..205]
CCHL_NEUCR - Cytochrome c heme lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257... CCHL_NEUCR - Cytochrome c heme lyase OS=Neurospora crassa GN=cyt-2 PE=3 SV=1	5.0E-65	[8..223]	[65..328]
CCHL_CANAL - Cytochrome c heme lyase OS=Candida albicans GN=CYC3 PE=3 SV=1	1.0E-63	[8..219]	[24..248]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSDQQGKC PVDEETKKLW LREHGNEAHP GATAPGNQLE CSANPQDNDK TPEYHTTVDL  60
   61 SQSREVSTIP RTNSDRNWIY PSEKQFYEAM MKKNWDPNSD DMKVVVPLHN SINERVWNYI 120
  121 KSWEDKQGGE ACGGIKLTNF KGDSKKLTPR AWFRSRILHL AKPFDRHDWQ IDRCGKTVDY 180
  181 VIDFYSTDLN DANSQQQPLI YLDVRPKLNS FEGFRLRFWK SLGF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	148.236572
Match:	PF01265
Description:	Cytochrome c/c1 heme lyase

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits