YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165921849, gi...
Organism:	Yersinia pestis biovar Orientalis str. F1991016
Length:	498 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165921849, gi....

Description	E-value	Query Range	Subject Range
UBID_YERPS - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Yersinia pseudotuberculosis GN=ubiD PE=3 SV=1 UBID_YERPS - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Yersinia pseudotuberculosis serotype I (strain IP329... gi\|153948611, gi... - gi\|153948611\|ref\|YP_001399277.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Yersinia pseudotuberc...	0.0	[1..498]	[1..498]
gi\|21957155, gi\|... - gi\|22124376\|ref\|NP_667799.1\| oxidoreductase [Yersinia pestis KIM], gi\|21957155\|gb\|AAM84050.1\|AE01364... gi\|45443030, gi\|... - gi\|45443030\|ref\|NP_994569.1\| putative oxidoreductase [Yersinia pestis biovar Microtus str. 91001], g... gi\|77633079 - gi\|77633079\|ref\|ZP_00795232.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec... gi\|165939157, gi... - gi\|89102425\|ref\|ZP_01175060.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec... gi\|166012141, gi... - gi\|166012141\|ref\|ZP_02233039.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis biovar... gi\|108809430, gi... - gi\|108809430\|ref\|YP_653346.1\| hypothetical protein YPA_3439 [Yersinia pestis Antiqua], gi\|108781343\|... gi\|166961031, gi... - gi\|167420902\|ref\|ZP_02312655.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis biovar... gi\|108810361, gi... - gi\|108810361\|ref\|YP_646128.1\| hypothetical protein YPN_0195 [Yersinia pestis Nepal516], gi\|108774009... gi\|166205215, gi... - gi\|166213542\|ref\|ZP_02239577.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis biovar... gi\|167426275, gi... - gi\|167426275\|ref\|ZP_02318028.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis biovar...	0.0	[1..498]	[9..506]
gi\|117672101, gi... - gi\|77630670\|ref\|ZP_00793256.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec... gi\|186893620, gi... - gi\|186893620\|ref\|YP_001870732.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Yersinia pseudotuberc... gi\|170026147, gi... - gi\|170026147\|ref\|YP_001722652.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Yersinia pseudotuberc...	0.0	[1..498]	[9..506]
gi\|77973701 - gi\|77973701\|ref\|ZP_00829247.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..498]	[9..506]
gi\|77978471 - gi\|77978471\|ref\|ZP_00833899.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..498]	[9..506]
gi\|77956566 - gi\|77956566\|ref\|ZP_00820656.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..498]	[9..506]
gi\|238798046, gi... - gi\|77961736\|ref\|ZP_00825567.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..498]	[9..506]
UBID_SHIFL - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Shigella flexneri GN=ubiD PE=3 SV=1 gi\|24054409, gi\|... - gi\|24115137\|ref\|NP_709647.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Shigella flexneri 2a str....	0.0	[1..494]	[1..494]
gi\|30043122, gi\|... - gi\|30064862\|ref\|NP_839033.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Shigella flexneri 2a str....	0.0	[1..494]	[1..494]
gi\|75512604, gi\|... - gi\|75512604\|ref\|ZP_00735116.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec... gi\|157163317, gi... - gi\|75197724\|ref\|ZP_00707794.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..494]	[1..494]

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Predicted Domain #1

Region A:
Residues: [1-498]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISMKYRDLR DFLSLLEQRG ELKRISQPID PYLEMTEIAD RTLRAGGPAL LFENPKGYSM  60
   61 PVLCNLFGTA KRVAMGMGQE DVSALRDVGK LLAFLKEPDP PKGFRDLFDK LPKFKQVLNM 120
  121 PTKRLNSAPC QEQVWQGEDV DLSRIPVMHC WPEDAAPLVS WGLTITRGPH KERQNLGIYR 180
  181 QQVLGKNKLI MRWLSHRGGA LDYQEWCEAH PGERFPVAVA LGADPATILA AVTPVPDTLS 240
  241 EYAFAGLLRG HKTEVVKCLS NDLEVPASAE IVLEGYIEQG DMAPEGPYGD HTGYYNEIDN 300
  301 FPVFTVTHIT QRQDAIYHST YTGRPPDEPA VMGVALNEVF VPILQKQFPE IVDFYLPPEG 360
  361 CSYRLAVVTI KKQYAGHAKR VMMGIWSFLR QFMYTKFVIV CDDDINARDW NDVIWAITTR 420
  421 MDPSRDTVLI ENTPIDYLDF ASPVSGLGSK MGLDATNKWP AETPREWGRP IKMDEDVRAR 480
  481 IDALWDELAI FSDKDAKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2idbA
Description:	No description for 2idbA was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	0.806130882178534	bayes_pls_golite062009
catalytic activity	0.660906721832294	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: