YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213053503
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213053503.

Description	E-value	Query Range	Subject Range
FLIT_SALPA - Flagellar protein FliT OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=fliT PE=3 SV=1 FLIT_SALPK - Flagellar protein FliT OS=Salmonella paratyphi A (strain AKU_12601) GN=fliT PE=3 SV=1 FLIT_SALPA - Flagellar protein FliT OS=Salmonella paratyphi A GN=fliT PE=3 SV=1	141.0	[0..1]	[122..1]
gi\|22126351, gi\|... - gi\|22126351\|ref\|NP_669774.1\| flagellar biosynthesis protein FliT [Yersinia pestis KIM], gi\|21959334\|... gi\|45436233, gi\|... - gi\|45441373\|ref\|NP_992912.1\| flagellar biosynthesis protein FliT [Yersinia pestis biovar Microtus st...	133.0	[0..1]	[115..18]
FLIT_ECOK1 - Flagellar protein FliT OS=Escherichia coli O1:K1 / APEC GN=fliT PE=3 SV=1 gi\|237705883, gi... - gi\|237705883\|ref\|ZP_04536364.1\| flagellar protein fliT [Escherichia sp. 3_2_53FAA], gi\|226900640\|gb\|... gi\|227837220, gi... - gi\|227885647\|ref\|ZP_04003452.1\| flagellar biosynthesis protein FliT [Escherichia coli 83972], gi\|227... sp\|B7USU5\|FLIT_ECO27 - Flagellar protein FliT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fliT PE=3 SV=1 FLIT_ECOL6 - Flagellar protein FliT OS=Escherichia coli O6 GN=fliT PE=3 SV=1 FLIT_SHIFL - Flagellar protein FliT OS=Shigella flexneri GN=fliT PE=3 SV=1 FLIT_SHIF8 - Flagellar protein FliT OS=Shigella flexneri serotype 5b (strain 8401) GN=fliT PE=3 SV=1 FLIT_ECOUT - Flagellar protein FliT OS=Escherichia coli (strain UTI89 / UPEC) GN=fliT PE=3 SV=1 FLIT_ECOL6 - Flagellar protein FliT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fliT PE=3 S... gi\|30041620, gi\|... - gi\|30063368\|ref\|NP_837539.1\| flagellar biosynthesis protein FliT [Shigella flexneri 2a str. 2457T], ... FLIT_ECO45 - Flagellar protein FliT OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fliT PE=3 SV=1 gi\|24052311, gi\|... - gi\|24113302\|ref\|NP_707812.1\| flagellar biosynthesis protein FliT [Shigella flexneri 2a str. 301], gi... FLIT_ECO27 - Flagellar protein FliT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fliT PE=3 SV=1	130.0	[0..1]	[116..1]
gi\|89108761, gi\|... - gi\|89108761\|ref\|AP_002541.1\| predicted chaperone [Escherichia coli str. K-12 substr. W3110], gi\|1736... gi\|13362133, gi\|... - gi\|15831919\|ref\|NP_310692.1\| flagellar biosynthesis protein FliT [Escherichia coli O157:H7 str. Saka... FLIT_ECO57 - Flagellar protein FliT OS=Escherichia coli O157:H7 GN=fliT PE=3 SV=1 EG11389 - putative flagellar synthesis and assembly chaperone / Flagellar synthesis, predicted chaperone, role... gi\|12516027, gi\|... - gi\|15802361\|ref\|NP_288387.1\| flagellar biosynthesis protein FliT [Escherichia coli O157:H7 EDL933], ... EG11389 - putative flagellar synthesis and assembly chaperone / Flagellar synthesis, predicted chaperone, role... FLIT_ECODH - Flagellar protein FliT OS=Escherichia coli (strain K12 / DH10B) GN=fliT PE=3 SV=1 gi\|168751853, gi... - gi\|188014171\|gb\|EDU52293.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4113], gi\|168751... gi\|189354923, gi... - gi\|189354923\|gb\|EDU73342.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4401], gi\|168758... FLIT_ECOLI - Flagellar protein fliT - Escherichia coli FLIT_ECOBW - Flagellar protein FliT OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fliT PE=3 SV=1 gi\|253324165, gi... - gi\|253773121\|ref\|YP_003035952.1\| flagellar export chaperone [Escherichia coli BL21(DE3)], gi\|2533241... gi\|254793577, gi... - gi\|254793577\|ref\|YP_003078414.1\| predicted chaperone [Escherichia coli O157:H7 str. TW14359], gi\|254... gi\|208731089, gi... - gi\|208816746\|ref\|ZP_03257866.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208738422, gi... - gi\|208818299\|ref\|ZP_03258619.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4042], gi\|20... FLIT_ECO5E - Flagellar protein FliT OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fliT PE=3 SV=1 gi\|217317943, gi... - gi\|217328596\|ref\|ZP_03444677.1\| flagellar protein FliT [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|189370201, gi... - gi\|189370201\|gb\|EDU88617.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC869], gi\|1687903... gi\|189375700, gi... - gi\|189375700\|gb\|EDU94116.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC508], gi\|1688022... gi\|195939231 - gi\|195939231\|ref\|ZP_03084613.1\| flagellar biosynthesis protein FliT [Escherichia coli O157:H7 str. E... gi\|208810272, gi... - gi\|208810272\|ref\|ZP_03252148.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|189365551, gi... - gi\|189365551\|gb\|EDU83967.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4501], gi\|168764... gi\|189359717, gi... - gi\|189359717\|gb\|EDU78136.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4486], gi\|168771... gi\|187767396, gi... - gi\|187767396\|gb\|EDU31240.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4196], gi\|168777... gi\|188999327, gi... - gi\|188999327\|gb\|EDU68313.1\| flagellar protein FliT [Escherichia coli O157:H7 str. EC4076], gi\|168783...	130.0	[0..1]	[116..1]
FLIT_ECO8A - Flagellar protein FliT OS=Escherichia coli O8 (strain IAI1) GN=fliT PE=3 SV=1 gi\|75255525, gi\|... - gi\|75255525\|ref\|ZP_00727317.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli E22]... gi\|194429947, gi... - gi\|75208826\|ref\|ZP_00709110.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli B171... gi\|194439568, gi... - gi\|83585036\|ref\|ZP_00923690.1\| COG1012: NAD-dependent aldehyde dehydrogenases [Escherichia coli 101-...	130.0	[0..1]	[116..1]
FLIT_SHISS - Flagellar protein FliT OS=Shigella sonnei (strain Ss046) GN=fliT PE=3 SV=1	130.0	[0..1]	[116..1]
gi\|89105437, gi\|... - gi\|89105437\|ref\|ZP_01177956.1\| COG0542: ATPases with chaperone activity, ATP-binding subunit [Yersin... gi\|229896285, gi... - gi\|229896285\|ref\|ZP_04511455.1\| Flagellar biosynthesis protein fliT [Yersinia pestis Pestoides A], g... FLIT_YERPA - Flagellar protein FliT OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fliT PE=3 SV=1 gi\|229693558, gi... - gi\|229897221\|ref\|ZP_04512377.1\| Flagellar biosynthesis protein fliT [Yersinia pestis biovar Oriental... FLIT_YERPN - Flagellar protein FliT OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fliT PE=3 SV=1 gi\|229897948, gi... - gi\|229897948\|ref\|ZP_04513099.1\| Flagellar biosynthesis protein fliT [Yersinia pestis biovar Oriental... gi\|167419952, gi... - gi\|167419952\|ref\|ZP_02311705.1\| flagellar protein FliT [Yersinia pestis biovar Orientalis str. MG05-... gi\|166208313, gi... - gi\|166211133\|ref\|ZP_02237168.1\| flagellar protein FliT [Yersinia pestis biovar Antiqua str. B4200300... gi\|167468930 - gi\|167468930\|ref\|ZP_02333634.1\| flagellar biosynthesis protein FliT [Yersinia pestis FV-1] gi\|167425868, gi... - gi\|167425868\|ref\|ZP_02317621.1\| flagellar protein FliT [Yersinia pestis biovar Mediaevalis str. K197... FLIT_YERPG - Flagellar protein FliT OS=Yersinia pestis bv. Antiqua (strain Angola) GN=fliT PE=3 SV=2 gi\|149366215, gi... - gi\|149366215\|ref\|ZP_01888250.1\| FliT [Yersinia pestis CA88-4125], gi\|149292628\|gb\|EDM42702.1\| FliT [... gi\|166010929, gi... - gi\|166010929\|ref\|ZP_02231827.1\| flagellar protein FliT [Yersinia pestis biovar Antiqua str. E1979001... gi\|165925944, gi... - gi\|165925944\|ref\|ZP_02221776.1\| flagellar protein FliT [Yersinia pestis biovar Orientalis str. F1991... gi\|218928958, gi... - gi\|218928958\|ref\|YP_002346833.1\| flagellar biosynthesis protein FliT [Yersinia pestis CO92], gi\|1612... FLIT_YERPE - Flagellar protein FliT OS=Yersinia pestis GN=fliT PE=3 SV=2	130.0	[0..1]	[115..1]
FLIT_ECOHS - Flagellar protein FliT OS=Escherichia coli O9:H4 (strain HS) GN=fliT PE=3 SV=1 FLIT_ECO7I - Flagellar protein FliT OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=fliT PE=3 SV=1	129.0	[0..1]	[116..1]
gi\|75511452, gi\|... - gi\|75511452\|ref\|ZP_00734127.1\| hypothetical protein Ecol5_01004270 [Escherichia coli 53638], gi\|1884...	129.0	[0..1]	[116..1]
gi\|193071136, gi... - gi\|75233948\|ref\|ZP_00718401.1\| hypothetical protein EcolE1_01004070 [Escherichia coli E110019], gi\|1...	129.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTVEFINR WQRIALLSQS LLELAQRGEW DLLLQQEVSY LQSIETVMEK QTPPGITRSI  60
   61 QDMVAGYIKQ TLDNEQLLKG LLQQRLDELS SLIGQSTRQK SLNNAYGRLS GMLLVPDAPG 120
  121 AS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	84.107905
Match:	PF05400.4
Description:	No description for PF05400.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.963	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.943	N/A	N/A	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.943	N/A	N/A	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.942	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.940	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.926	N/A	N/A	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.926	N/A	N/A	a.7.3	Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View	Download	0.912	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.912	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.860	N/A	N/A	a.118.8	TPR-like
View	Download	0.831	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.549	N/A	N/A	a.7.8	GAT domain
View	Download	0.540	N/A	N/A	a.1.1	Globin-like
View	Download	0.496	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits