YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213425056
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	680 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213425056.

Description	E-value	Query Range	Subject Range
gi\|165915120, gi... - gi\|89105112\|ref\|ZP_01177638.1\| COG0339: Zn-dependent oligopeptidases [Yersinia pestis biovar Orienta... gi\|229691095, gi... - gi\|229841756\|ref\|ZP_04461912.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. India 195],... gi\|108781706, gi... - gi\|108809793\|ref\|YP_653709.1\| oligopeptidase A [Yersinia pestis Antiqua], gi\|108781706\|gb\|ABG15764.1... gi\|229696039, gi... - gi\|229839673\|ref\|ZP_04459832.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. PEXU2], gi\|... gi\|229678412, gi... - gi\|229904294\|ref\|ZP_04519405.1\| oligopeptidase A [Yersinia pestis Nepal516], gi\|229678412\|gb\|EEO7451... gi\|229706515, gi... - gi\|229836447\|ref\|ZP_04456614.1\| oligopeptidase A [Yersinia pestis Pestoides A], gi\|229706515\|gb\|EEO9... gi\|162353098, gi... - gi\|77635480\|ref\|ZP_00797564.1\| COG0339: Zn-dependent oligopeptidases [Yersinia pestis Angola], gi\|16... gi\|165926985, gi... - gi\|165926985\|ref\|ZP_02222817.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. F1991016], ... gi\|166009704, gi... - gi\|166009704\|ref\|ZP_02230602.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. E1979001], gi\|... gi\|166205336, gi... - gi\|166213395\|ref\|ZP_02239430.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. B42003004], gi... gi\|150261069, gi... - gi\|150261069\|ref\|ZP_01917797.1\| oligopeptidase A [Yersinia pestis CA88-4125], gi\|149290477\|gb\|EDM405... gi\|167400663, gi... - gi\|167400663\|ref\|ZP_02306172.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. UG05-0454], gi... gi\|167420890, gi... - gi\|167420890\|ref\|ZP_02312643.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. MG05-1020],... gi\|167426620, gi... - gi\|167426620\|ref\|ZP_02318373.1\| oligopeptidase A [Yersinia pestis biovar Mediaevalis str. K1973002],... gi\|145212287, gi... - gi\|145600591\|ref\|YP_001164667.1\| oligopeptidase A [Yersinia pestis Pestoides F], gi\|145212287\|gb\|ABP... gi\|21960848, gi\|... - gi\|22127726\|ref\|NP_671149.1\| oligopeptidase A [Yersinia pestis KIM], gi\|21960848\|gb\|AAM87400.1\|AE013... gi\|25319701 - pir\|\|AH0483 oligopeptidase A (EC 3.4.24.70) [imported] - Yersinia pestis (strain CO92) gi\|15981883, gi\|... - gi\|218930970\|ref\|YP_002348845.1\| oligopeptidase A [Yersinia pestis CO92], gi\|16124102\|ref\|NP_407415.... gi\|45443086, gi\|... - gi\|45443086\|ref\|NP_994625.1\| oligopeptidase A [Yersinia pestis biovar Microtus str. 91001], gi\|45437...	0.0	[1..680]	[1..680]
Q664F3\|Q664F3_YERPS - Oligopeptidase A - Yersinia pseudotuberculosis gi\|51598106, gi\|... - gi\|51598106\|ref\|YP_072297.1\| oligopeptidase A [Yersinia pseudotuberculosis IP 32953], gi\|51591388\|em...	0.0	[1..680]	[1..680]
gi\|238783931, gi... - gi\|77959588\|ref\|ZP_00823606.1\| COG0339: Zn-dependent oligopeptidases [Yersinia bercovieri ATCC 43970...	0.0	[1..680]	[1..680]
gi\|28805052, gi\|... - gi\|28896844\|ref\|NP_796449.1\| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633], gi\|28805052\|db... gi\|28805052 - gi\|28805052\|dbj\|BAC58333.1\| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633]	0.0	[1..679]	[1..679]
gi\|77975114, gi\|... - gi\|77975114\|ref\|ZP_00830651.1\| COG0339: Zn-dependent oligopeptidases [Yersinia frederiksenii ATCC 33...	0.0	[1..680]	[1..680]
gi\|77963010, gi\|... - gi\|77963010\|ref\|ZP_00826824.1\| COG0339: Zn-dependent oligopeptidases [Yersinia mollaretii ATCC 43969...	0.0	[1..680]	[1..680]
gi\|91212991, gi\|... - gi\|91212991\|ref\|YP_542977.1\| oligopeptidase A [Escherichia coli UTI89], gi\|91074565\|gb\|ABE09446.1\| o...	0.0	[1..680]	[14..693]
gi\|30065219, gi\|... - gi\|30065219\|ref\|NP_839390.1\| oligopeptidase A [Shigella flexneri 2a str. 2457T], gi\|30043481\|gb\|AAP1... gi\|110616881, gi... - gi\|110807333\|ref\|YP_690853.1\| oligopeptidase A [Shigella flexneri 5 str. 8401], gi\|110616881\|gb\|ABF0... gi\|56383906, gi\|... - gi\|56480355\|ref\|NP_709278.2\| oligopeptidase A [Shigella flexneri 2a str. 301], gi\|56383906\|gb\|AAN449...	0.0	[1..680]	[1..680]
gi\|187730439, gi... - gi\|75179940\|ref\|ZP_00699927.1\| COG0339: Zn-dependent oligopeptidases [Shigella boydii BS512], gi\|187...	0.0	[1..680]	[1..680]
gi\|124528584, gi... - gi\|124528584\|ref\|ZP_01699862.1\| Oligopeptidase A [Escherichia coli B], gi\|124500425\|gb\|EAY47898.1\| O... EG11441 - oligopeptidase A / Oligopeptidase A, zinc metalloprotease; involved in the degradation of cleaved si... EG11441 - oligopeptidase A / Oligopeptidase A, zinc metalloprotease; involved in the degradation of cleaved si... gi\|238902587, gi... - gi\|238902587\|ref\|YP_002928383.1\| oligopeptidase A [Escherichia coli BW2952], gi\|238861932\|gb\|ACR6393... gi\|226839176, gi... - gi\|254038670\|ref\|ZP_04872726.1\| oligopeptidase A [Escherichia sp. 1_1_43], gi\|226839176\|gb\|EEH71199.... gi\|89110515, gi\|... - gi\|89110515\|ref\|AP_004295.1\| oligopeptidase A [Escherichia coli str. K-12 substr. W3110], gi\|8567654... gi\|170018272, gi... - gi\|170018272\|ref\|YP_001723226.1\| oligopeptidase A [Escherichia coli ATCC 8739], gi\|169753200\|gb\|ACA7... gi\|75516039, gi\|... - gi\|75516039\|ref\|ZP_00738157.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli 53638], gi\|18... gi\|75260213, gi\|... - gi\|75260213\|ref\|ZP_00731481.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli E22], gi\|1930... gi\|170684269, gi... - gi\|170684269\|ref\|YP_001745753.1\| oligopeptidase A [Escherichia coli SMS-3-5], gi\|170521987\|gb\|ACB201... gi\|194414962, gi... - gi\|75211865\|ref\|ZP_00711929.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli B171], gi\|194... gi\|170083009, gi... - gi\|170083009\|ref\|YP_001732329.1\| oligopeptidase A [Escherichia coli str. K-12 substr. DH10B], gi\|169... OPDA_ECOLI - Oligopeptidase A (EC 3.4.24.70) - Escherichia coli gi\|157162974, gi... - gi\|75197419\|ref\|ZP_00707489.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli HS], gi\|15716... gi\|218702251, gi... - gi\|218702251\|ref\|YP_002409880.1\| oligopeptidase A [Escherichia coli IAI39], gi\|218372237\|emb\|CAR2009... gi\|209914213, gi... - gi\|209920954\|ref\|YP_002295038.1\| oligopeptidase A [Escherichia coli SE11], gi\|209914213\|dbj\|BAG79287...	0.0	[1..680]	[1..680]

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Predicted Domain #1

Region A:
Residues: [1-680]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPLLTSFS LPPFSAIKPE HVVPAVTKAL ADCRAAVEGV VAHGAPYSWE NLCQPLAEAD  60
   61 DVLGRIFSPI SHLNSVKNSP ELREAYEQTL PLLSEYSTWV GQHEGLYNAY RDLRDGDHYA 120
  121 TLNTAQKKAV DNALRDFELS GIGLPKEKQQ RYGEIATRLS ELGNQYSNNV LDATMGWTKL 180
  181 ITDEAELAGM PESALAAAKA LAEAKEQEGY LLTLDIPSYL PVMTYCDNQA LREEMYRAYS 240
  241 TRASDQGPNA GKWDNSPVME EILALRHELA QLLGFENYAH ESLATKMAEN PQQVLDFLTD 300
  301 LAKRARPQGE KELAQLRAFA KAEFGVEELQ PWDIAYYSEK QKQHLYSISD EQLRPYFPEN 360
  361 KAVNGLFEVV KRIYGITAKE RTDVDVWHPE VRFFELYDEN NELRGSFYLD LYAREHKRGG 420
  421 AWMDDCVGQM RKADGTLQKP VAYLTCNFNR PVNGKPALFT HDEVITLFHE FGHGLHHMLT 480
  481 RIETAGVSGI SGVPWDAVEL PSQFMENWCW EPEALAFISG HYETGEPLPK ELLDKMLAAK 540
  541 NYQAALFILR QLEFGLFDFR LHAEFNPQQG AKILDTLFEI KKQVAVVPSP TWGRFPHAFS 600
  601 HIFAGGYAAG YYSYLWADVL AADAYSRFEE EGIFNRETGQ SFLDNILTRG GSEEPMELFK 660
  661 RFRGREPQLD AMLEHYGIKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	158.0
Match:	2o36A
Description:	No description for 2o36A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits