YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214002650
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214002650.

Description	E-value	Query Range	Subject Range
gi\|56127459, gi\|... - gi\|56413202\|ref\|YP_150277.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Par... gi\|197093605, gi... - gi\|197362128\|ref\|YP_002141765.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar...	6.0E-53	[1..232]	[1..232]
gi\|187734182, gi... - gi\|75175681\|ref\|ZP_00695887.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	6.0E-50	[1..219]	[1..219]
gi\|81245076, gi\|... - gi\|82543665\|ref\|YP_407612.1\| exodeoxyribonuclease X [Shigella boydii Sb227], gi\|81245076\|gb\|ABB65784...	2.0E-49	[1..218]	[1..218]
EG14031 - exodeoxyribonuclease 10; DNA exonuclease X / Exodeoxyribonuclease 10, Exonuclease X; 3'-5' DNase; co... EXOX_ECOLI - Exodeoxyribonuclease 10 (EC 3.1.11.-) (Exodeoxyribonuclease X) (Exonuclease X) (Exo X) - Escherichia... gi\|115513121, gi... - gi\|117623997\|ref\|YP_852910.1\| exodeoxyribonuclease X [Escherichia coli APEC O1], gi\|115513121\|gb\|ABJ... gi\|218558708, gi... - gi\|218558708\|ref\|YP_002391621.1\| exodeoxyribonuclease X [Escherichia coli S88], gi\|218365477\|emb\|CAR... gi\|218689782, gi... - gi\|218689782\|ref\|YP_002397994.1\| exodeoxyribonuclease X [Escherichia coli ED1a], gi\|218427346\|emb\|CA... gi\|218352142, gi... - gi\|218695410\|ref\|YP_002403077.1\| exodeoxyribonuclease X [Escherichia coli 55989], gi\|218352142\|emb\|C... gi\|218369571, gi... - gi\|218699585\|ref\|YP_002407214.1\| exodeoxyribonuclease X [Escherichia coli IAI39], gi\|218369571\|emb\|C... gi\|218705343, gi... - gi\|218705343\|ref\|YP_002412862.1\| exodeoxyribonuclease X [Escherichia coli UMN026], gi\|218432440\|emb\|... EXOX_ECOL6 - Exodeoxyribonuclease 10 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=exoX PE=3 ... gi\|169889335, gi... - gi\|170081500\|ref\|YP_001730820.1\| DNA exonuclease X [Escherichia coli str. K-12 substr. DH10B], gi\|16... gi\|170681411, gi... - gi\|170681411\|ref\|YP_001743401.1\| exodeoxyribonuclease X [Escherichia coli SMS-3-5], gi\|170519129\|gb\|... gi\|209919210, gi... - gi\|209919210\|ref\|YP_002293294.1\| exodeoxyribonuclease X [Escherichia coli SE11], gi\|209912469\|dbj\|BA... gi\|218554418, gi... - gi\|218554418\|ref\|YP_002387331.1\| exodeoxyribonuclease X [Escherichia coli IAI1], gi\|218361186\|emb\|CA... EXOX_ECOL6 - Exodeoxyribonuclease 10 OS=Escherichia coli O6 GN=exoX PE=3 SV=1 EG14031 - exodeoxyribonuclease 10; DNA exonuclease X / Exodeoxyribonuclease 10, Exonuclease X; 3'-5' DNase; co... gi\|82776429, gi\|... - gi\|82776429\|ref\|YP_402778.1\| exodeoxyribonuclease X [Shigella dysenteriae Sd197], gi\|81240577\|gb\|ABB... gi\|85675148, gi\|... - gi\|89108684\|ref\|AP_002464.1\| DNA exonuclease X [Escherichia coli str. K-12 substr. W3110], gi\|856751... gi\|194412310, gi... - gi\|75209110\|ref\|ZP_00709365.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|75228302, gi\|... - gi\|75228302\|ref\|ZP_00714954.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|194422021, gi... - gi\|83585555\|ref\|ZP_00924199.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|91211067, gi\|... - gi\|91211067\|ref\|YP_541053.1\| exodeoxyribonuclease X [Escherichia coli UTI89], gi\|91072641\|gb\|ABE0752... gi\|157081329, gi... - gi\|75190873\|ref\|ZP_00704140.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|110641962, gi... - gi\|110641962\|ref\|YP_669692.1\| exodeoxyribonuclease X [Escherichia coli 536], gi\|110343554\|gb\|ABG6979... gi\|75511814, gi\|... - gi\|75511814\|ref\|ZP_00734432.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|74311833, gi\|... - gi\|74311833\|ref\|YP_310252.1\| exodeoxyribonuclease X [Shigella sonnei Ss046], gi\|73855310\|gb\|AAZ88017... gi\|190906679, gi... - gi\|75239735\|ref\|ZP_00723698.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|75255859, gi\|... - gi\|75255859\|ref\|ZP_00727598.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|227885729, gi... - gi\|227885729\|ref\|ZP_04003534.1\| exodeoxyribonuclease X [Escherichia coli 83972], gi\|227837302\|gb\|EEJ... gi\|237705796, gi... - gi\|237705796\|ref\|ZP_04536277.1\| exodeoxyribonuclease X [Escherichia sp. 3_2_53FAA], gi\|226900553\|gb\|... gi\|238901059, gi... - gi\|238901059\|ref\|YP_002926855.1\| DNA exonuclease X [Escherichia coli BW2952], gi\|238860815\|gb\|ACR628...	3.0E-49	[1..218]	[1..218]
gi\|56383525, gi\|... - gi\|56479974\|ref\|NP_707706.2\| exodeoxyribonuclease X [Shigella flexneri 2a str. 301], gi\|56383525\|gb\|... gi\|30063256, gi\|... - gi\|30063256\|ref\|NP_837427.1\| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T], gi\|30041508\|g...	6.0E-49	[1..218]	[1..218]
gi\|26108511, gi\|... - gi\|26248108\|ref\|NP_754148.1\| exodeoxyribonuclease X [Escherichia coli CFT073], gi\|26108511\|gb\|AAN807... tr\|A0A0G3HGP2\|A0... - Exodeoxyribonuclease 10 DNA exonuclease X protein OS=Escherichia coli (strain K12) GN=exoX PE=4 SV=1	8.0E-49	[1..218]	[19..236]
gi\|143342 - gi\|143342\|gb\|AAA22666.1\| polymerase III	9.0E-49	[2..223]	[421..656]
DPO3_BACSU - DNA polymerase III polC-type OS=Bacillus subtilis GN=polC PE=1 SV=2 gi\|221318783 - gi\|221318783\|ref\|ZP_03600077.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313860 - gi\|221313860\|ref\|ZP_03595665.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB... gi\|221323055 - gi\|221323055\|ref\|ZP_03604349.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] DPO3_BACSU - DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168) GN=polC PE=1 SV=2	9.0E-49	[2..223]	[421..656]
gi\|13362022, gi\|... - gi\|15831808\|ref\|NP_310581.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai], gi\|133620... gi\|189372044, gi... - gi\|189372044\|gb\|EDU90460.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869], gi\|1687882... gi\|189367397, gi... - gi\|189367397\|gb\|EDU85813.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501], gi\|168762... gi\|25511709, gi\|... - pir\|\|F85796 exonuclease X [similarity] - Escherichia coli (strain O157:H7, substrain EDL933), pir\|\|... gi\|217318148, gi... - gi\|217328801\|ref\|ZP_03444882.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|15802257, gi\|... - gi\|15802257\|ref\|NP_288281.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933], gi\|12515897\|g... gi\|13362022, gi\|... - gi\|15831808\|ref\|NP_310581.1\| exodeoxyribonuclease X [Escherichia coli O157:H7], gi\|13362022\|dbj\|BAB3...	9.0E-49	[1..218]	[1..218]
gi\|110805789, gi... - gi\|110805789\|ref\|YP_689309.1\| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401], gi\|110615337\|g...	1.0E-48	[1..218]	[1..218]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIIDTETC GLQGGIVEIA SVDVIDGNIV NPMSHLIRPD RPITPQAMAI HRITEAMVAD  60
   61 KPWIEDVIPL YYGSEWYVAH NASFDRRVLP ELPGEWICTM KLSRRLWPGI KYSNMALYKS 120
  121 RKLSVQTPPG LHHHRALYDC YITAALLIDI MRTTGWTAEE MVNITGRPAL LTTFPFGKYR 180
  181 GKAVSEVAKR DPGYLRWLFN NLDNMSPELR LTLKHYLEDV QAGEQRSNGT PQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.30103
Match:	2p1jA
Description:	No description for 2p1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits