YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213023462
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. 404ty
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213023462.

Description	E-value	Query Range	Subject Range
gi\|1773113 - gi\|1773113\|gb\|AAB40185.1\| cytochrome o ubiquinol oxidase C subunit [Escherichia coli]	2.0E-31	[1..109]	[28..136]
gi\|115511813, gi... - gi\|117622689\|ref\|YP_851602.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli APEC O1], ...	5.0E-31	[1..109]	[28..136]
gi\|114536608, gi... - gi\|114707979\|ref\|ZP_01440871.1\| Prokaryotic Cytochrome C oxidase subunit IV [Fulvimarina pelagi HTCC...	2.0E-30	[4..107]	[19..123]
gi\|25331182 - pir\|\|AD3489 cytochrome o ubiquinol oxidase operon protein cyod [imported] - Brucella melitensis (str... gi\|17983942, gi\|... - gi\|17988181\|ref\|NP_540815.1\| cytochrome O ubiquinol oxidase operon protein CYOD [Brucella melitensis...	1.0E-27	[2..107]	[30..135]
gi\|33593692, gi\|... - gi\|33593692\|ref\|NP_881336.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis Tohama I]... gi\|33565846 - gi\|33565846\|emb\|CAE36392.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis] gi\|33595767 - gi\|33595767\|ref\|NP_883410.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella parapertussis 12822... gi\|33600293, gi\|... - gi\|33600293\|ref\|NP_887853.1\| cytochrome ubiquinol oxidase subunit IV [Bordetella bronchiseptica RB50...	4.0E-27	[3..107]	[19..124]
gi\|187431208, gi... - gi\|75176903\|ref\|ZP_00697019.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Shige...	6.0E-27	[1..109]	[1..109]
CYOD_SHIFL - Cytochrome bo(3) ubiquinol oxidase subunit 4 OS=Shigella flexneri GN=cyoD PE=3 SV=1 gi\|75230156, gi\|... - gi\|75230156\|ref\|ZP_00716660.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|195938504 - gi\|195938504\|ref\|ZP_03083886.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli O157:H7 ... gi\|24050601, gi\|... - gi\|24111811\|ref\|NP_706321.1\| cytochrome o ubiquinol oxidase subunit IV [Shigella flexneri 2a str. 30... gi\|75237187 - gi\|75237187\|ref\|ZP_00721234.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|170683697, gi... - gi\|170683697\|ref\|YP_001742570.1\| cytochrome o ubiquinol oxidase, subunit IV [Escherichia coli SMS-3-... gi\|30061928, gi\|... - gi\|30061928\|ref\|NP_836099.1\| cytochrome o ubiquinol oxidase subunit IV [Shigella flexneri 2a str. 24... gi\|75194650, gi\|... - gi\|75194650\|ref\|ZP_00704720.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|209395894, gi... - gi\|209395894\|ref\|YP_002269075.1\| cytochrome o ubiquinol oxidase, subunit IV [Escherichia coli O157:H... CYOD_ECO57 - Cytochrome bo(3) ubiquinol oxidase subunit 4 OS=Escherichia coli O157:H7 GN=cyoD PE=3 SV=1 gi\|75209987 - gi\|75209987\|ref\|ZP_00710176.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|208815375, gi... - gi\|208815375\|ref\|ZP_03256554.1\| cytochrome o ubiquinol oxidase, subunit IV [Escherichia coli O157:H7... EG10181 - cytochrome o ubiquinol oxidase subunit IV / Cytochrome o oxidase subunit IV; cytochrome bo(3) ubiqui... gi\|74311004, gi\|... - gi\|74311004\|ref\|YP_309423.1\| cytochrome o ubiquinol oxidase subunit IV [Shigella sonnei Ss046], gi\|7... gi\|218549903, gi... - gi\|218549903\|ref\|YP_002383694.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia fergusonii A... gi\|12513288, gi\|... - gi\|15800159\|ref\|NP_286171.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli O157:H7 EDL... gi\|82542917, gi\|... - gi\|82542917\|ref\|YP_406864.1\| cytochrome o ubiquinol oxidase subunit IV [Shigella boydii Sb227], gi\|8... gi\|209910904, gi... - gi\|209917645\|ref\|YP_002291729.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli SE11], ... gi\|75256803, gi\|... - gi\|75256803\|ref\|ZP_00728408.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|218693892, gi... - gi\|218693892\|ref\|YP_002401559.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli 55989],... gi\|75512490, gi\|... - gi\|75512490\|ref\|ZP_00735029.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|218552995, gi... - gi\|218552995\|ref\|YP_002385908.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli IAI1], ... gi\|168749891, gi... - gi\|188015898\|gb\|EDU54020.1\| cytochrome o ubiquinol oxidase, subunit IV [Escherichia coli O157:H7 str... gi\|189368086, gi... - gi\|189368086\|gb\|EDU86502.1\| cytochrome o ubiquinol oxidase, subunit IV [Escherichia coli O157:H7 str... gi\|189356033, gi... - gi\|189356033\|gb\|EDU74452.1\| cytochrome o ubiquinol oxidase, subunit IV [Escherichia coli O157:H7 str... gi\|83585650 - gi\|83585650\|ref\|ZP_00924292.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|168800312, gi... - gi\|189377391\|gb\|EDU95807.1\| cytochrome o ubiquinol oxidase, subunit IV [Escherichia coli O157:H7 str... gi\|157157013, gi... - gi\|75189498\|ref\|ZP_00702765.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|187768304, gi... - gi\|187768304\|gb\|EDU32148.1\| cytochrome o ubiquinol oxidase, subunit IV [Escherichia coli O157:H7 str... gi\|238860710, gi... - gi\|238899717\|ref\|YP_002925513.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli BW2952]... gi\|124528860, gi... - gi\|124528860\|ref\|ZP_01700045.1\| cytochrome C oxidase subunit IV [Escherichia coli B], gi\|124500197\|g... gi\|169887850, gi... - gi\|170080015\|ref\|YP_001729335.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli str. K-... gi\|251783937, gi... - gi\|251783937\|ref\|YP_002998241.1\| hypothetical protein B21_00384 [Escherichia coli BL21], gi\|24237621... gi\|83570302 - gi\|83570302\|ref\|ZP_00921747.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Shige... gi\|170021199, gi... - gi\|170021199\|ref\|YP_001726153.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli ATCC 87... gi\|254287302, gi... - gi\|254287302\|ref\|YP_003053050.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli BL21(DE... gi\|253972399, gi... - gi\|254160498\|ref\|YP_003043606.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli B str. ... gi\|254591013, gi... - gi\|254791613\|ref\|YP_003076450.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli O157:H7... gi\|218430809, gi... - gi\|218703712\|ref\|YP_002411231.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli UMN026]... gi\|218698659, gi... - gi\|218698659\|ref\|YP_002406288.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli IAI39],... EG10181 - cytochrome o ubiquinol oxidase subunit IV / Cytochrome o oxidase subunit IV; cytochrome bo(3) ubiqui... gi\|13359940, gi\|... - gi\|15829737\|ref\|NP_308510.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli O157:H7 str... gi\|110614004, gi... - gi\|110804456\|ref\|YP_687976.1\| cytochrome o ubiquinol oxidase subunit IV [Shigella flexneri 5 str. 84... CYOD_ECOLI - Cytochrome o ubiquinol oxidase protein cyoD (Ubiquinol oxidase chain D) - Escherichia coli gi\|85674569, gi\|... - gi\|89107299\|ref\|AP_001079.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli str. K-12 s...	8.0E-27	[1..109]	[1..109]
gi\|218364107, gi... - gi\|218557338\|ref\|YP_002390251.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli S88], g... gi\|218425856, gi... - gi\|218688292\|ref\|YP_002396504.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli ED1a], ... gi\|237707577, gi... - gi\|237707577\|ref\|ZP_04538058.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia sp. 3_2_53FAA... gi\|215263582, gi... - gi\|215485510\|ref\|YP_002327941.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli O127:H6... gi\|75238756 - gi\|75238756\|ref\|ZP_00722744.1\| COG3125: Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Esche... gi\|110342281, gi... - gi\|110640689\|ref\|YP_668417.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli 536], gi\|1... gi\|91209498, gi\|... - gi\|91209498\|ref\|YP_539484.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli UTI89], gi\|...	2.0E-26	[1..109]	[1..109]
gi\|17429937 - gi\|17429937\|emb\|CAD16621.1\| probable transmembrane cytochrome o ubiquinol oxidase (subunit iv) oxido... gi\|17547633 - gi\|17547633\|ref\|NP_521035.1\| transmembrane cytochrome O ubiquinol oxidase subunit IV [Ralstonia sola...	3.0E-26	[2..109]	[14..121]
gi\|26106833, gi\|... - gi\|26246435\|ref\|NP_752474.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli CFT073], gi... gi\|227838648, gi... - gi\|227884562\|ref\|ZP_04002367.1\| cytochrome o ubiquinol oxidase subunit IV [Escherichia coli 83972], ...	4.0E-26	[1..109]	[1..109]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHSTESGGA SHGSVKTYMT GFILSVILTV IPFWMVMTGA ASPAVILGSI LAMAVVQILV  60
   61 HLVCFLHMNT KSDEGWNMTA FIFTVLIIAI LVVGSIWIMW NLNYNMMMH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.207608
Match:	PF03626.5
Description:	No description for PF03626.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits