YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197263856, gi...
Organism:	Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197263856, gi....

Description	E-value	Query Range	Subject Range
gi\|197362283, gi... - gi\|197362283\|ref\|YP_002141920.1\| hypothetical protein SSPA1080 [Salmonella enterica subsp. enterica ... gi\|56413359, gi\|... - gi\|56413359\|ref\|YP_150434.1\| hypothetical protein SPA1161 [Salmonella enterica subsp. enterica serov...	137.0	[0..1]	[83..1]
gi\|25510651 - pir\|\|AC0270 conserved hypothetical protein YPO2217 [imported] - Yersinia pestis (strain CO92) gi\|45441814, gi\|... - gi\|45441814\|ref\|NP_993353.1\| hypothetical protein YP_2014 [Yersinia pestis biovar Microtus str. 9100... gi\|22125948, gi\|... - gi\|22125948\|ref\|NP_669371.1\| hypothetical protein y2058 [Yersinia pestis KIM], gi\|21958889\|gb\|AAM856... gi\|115347924, gi... - gi\|218929313\|ref\|YP_002347188.1\| hypothetical protein YPO2217 [Yersinia pestis CO92], gi\|16122445\|re... gi\|51596465, gi\|... - gi\|51596465\|ref\|YP_070656.1\| hypothetical protein YPTB2139 [Yersinia pseudotuberculosis IP 32953], g... gi\|77636196, gi\|... - gi\|77636196\|ref\|ZP_00798272.1\| hypothetical protein YpesA_01000373 [Yersinia pestis Angola], gi\|1624... gi\|165913844, gi... - gi\|89105024\|ref\|ZP_01177552.1\| hypothetical protein Ypesb_01001030 [Yersinia pestis biovar Orientali... gi\|167420435, gi... - gi\|167420435\|ref\|ZP_02312188.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167049655, gi... - gi\|167400802\|ref\|ZP_02306308.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|169750804, gi... - gi\|170024270\|ref\|YP_001720775.1\| hypothetical protein YPK_2035 [Yersinia pseudotuberculosis YPIII], ... gi\|149292277, gi... - gi\|149365864\|ref\|ZP_01887899.1\| hypothetical protein YPE_1042 [Yersinia pestis CA88-4125], gi\|149292... gi\|167056175, gi... - gi\|167424988\|ref\|ZP_02316741.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229701997, gi... - gi\|229894902\|ref\|ZP_04510080.1\| hypothetical protein YPS_2680 [Yersinia pestis Pestoides A], gi\|2297... gi\|108779483, gi... - gi\|108807570\|ref\|YP_651486.1\| hypothetical protein YPA_1575 [Yersinia pestis Antiqua], gi\|108779483\|... gi\|145598215, gi... - gi\|145598215\|ref\|YP_001162291.1\| hypothetical protein YPDSF_0918 [Yersinia pestis Pestoides F], gi\|1... gi\|229897645, gi... - gi\|229897645\|ref\|ZP_04512801.1\| hypothetical protein YPH_4679 [Yersinia pestis biovar Orientalis str... gi\|108811846, gi... - gi\|229902149\|ref\|ZP_04517270.1\| hypothetical protein YP516_1875 [Yersinia pestis Nepal516], gi\|22968... gi\|186895514, gi... - gi\|186895514\|ref\|YP_001872626.1\| hypothetical protein YPTS_2208 [Yersinia pseudotuberculosis PB1/+],... gi\|229898290, gi... - gi\|229898290\|ref\|ZP_04513437.1\| hypothetical protein YPF_2719 [Yersinia pestis biovar Orientalis str... Q66AJ1\|Q66AJ1_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|165927358, gi... - gi\|165927358\|ref\|ZP_02223190.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166211112, gi... - gi\|166211112\|ref\|ZP_02237147.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166010618, gi... - gi\|166010618\|ref\|ZP_02231516.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ...	135.0	[0..1]	[83..1]
YCIN_ECOLI - Protein yciN - Escherichia coli gi\|194425949, gi... - gi\|75212710\|ref\|ZP_00712708.1\| hypothetical protein EcolB_01000089 [Escherichia coli B171], gi\|19442... gi\|218365028, gi... - gi\|218558259\|ref\|YP_002391172.1\| hypothetical protein ECS88_1409 [Escherichia coli S88], gi\|21836502... gi\|191166657, gi... - gi\|75230171\|ref\|ZP_00716672.1\| hypothetical protein EcolB7_01001578 [Escherichia coli B7A], gi\|19116... gi\|218689263, gi... - gi\|218689263\|ref\|YP_002397475.1\| hypothetical protein ECED1_1479 [Escherichia coli ED1a], gi\|2184268... gi\|191171098, gi... - gi\|75242072\|ref\|ZP_00725866.1\| hypothetical protein EcolF_01001015 [Escherichia coli F11], gi\|191171... gi\|218351576, gi... - gi\|218694844\|ref\|YP_002402511.1\| hypothetical protein EC55989_1430 [Escherichia coli 55989], gi\|2183... gi\|192931849, gi... - gi\|75259383\|ref\|ZP_00730702.1\| hypothetical protein EcolE2_01000814 [Escherichia coli E22], gi\|19306... gi\|218699983, gi... - gi\|218699983\|ref\|YP_002407612.1\| hypothetical protein ECIAI39_1612 [Escherichia coli IAI39], gi\|2183... gi\|188492938, gi... - gi\|75515115\|ref\|ZP_00737319.1\| hypothetical protein Ecol5_01001129 [Escherichia coli 53638], gi\|1884... gi\|218431893, gi... - gi\|218704796\|ref\|YP_002412315.1\| hypothetical protein ECUMN_1571 [Escherichia coli UMN026], gi\|21843... gi\|81240780, gi\|... - gi\|82776632\|ref\|YP_402981.1\| hypothetical protein SDY_1343 [Shigella dysenteriae Sd197], gi\|81240780... gi\|82544273, gi\|... - gi\|82544273\|ref\|YP_408220.1\| hypothetical protein SBO_1793 [Shigella boydii Sb227], gi\|81245684\|gb\|A... gi\|208811150, gi... - gi\|208811150\|ref\|ZP_03252983.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208732972, gi... - gi\|208816324\|ref\|ZP_03257503.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208738499, gi... - gi\|208818376\|ref\|ZP_03258696.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209159451, gi... - gi\|209398051\|ref\|YP_002270327.1\| hypothetical protein ECH74115_1905 [Escherichia coli O157:H7 str. E... gi\|194424033, gi... - gi\|83587410\|ref\|ZP_00926038.1\| hypothetical protein Ecol1_01001403 [Escherichia coli 101-1], gi\|1944... gi\|209918512, gi... - gi\|209918512\|ref\|YP_002292596.1\| hypothetical protein ECSE_1321 [Escherichia coli SE11], gi\|20991177... gi\|75179083, gi\|... - gi\|75179083\|ref\|ZP_00699101.1\| hypothetical protein SboyB_01000877 [Shigella boydii BS512], gi\|18773... gi\|215264640, gi... - gi\|215486568\|ref\|YP_002328999.1\| hypothetical protein E2348C_1463 [Escherichia coli O127:H6 str. E23... gi\|157076975, gi... - gi\|75190357\|ref\|ZP_00703624.1\| hypothetical protein EcolE_01003658 [Escherichia coli E24377A], gi\|15... gi\|217317889, gi... - gi\|217329450\|ref\|ZP_03445530.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|157160778, gi... - gi\|75195421\|ref\|ZP_00705491.1\| hypothetical protein EcolH_01001214 [Escherichia coli HS], gi\|1571607... gi\|218360593, gi... - gi\|218553825\|ref\|YP_002386738.1\| hypothetical protein ECIAI1_1292 [Escherichia coli IAI1], gi\|218360... gi\|254592261, gi... - gi\|254792861\|ref\|YP_003077698.1\| hypothetical protein ECSP_1791 [Escherichia coli O157:H7 str. TW143... gi\|189370399, gi... - gi\|189370399\|gb\|EDU88815.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189376275, gi... - gi\|189376275\|gb\|EDU94691.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170020363, gi... - gi\|170020363\|ref\|YP_001725317.1\| hypothetical protein EcolC_2355 [Escherichia coli ATCC 8739], gi\|16... gi\|169888785, gi... - gi\|170080950\|ref\|YP_001730270.1\| hypothetical protein ECDH10B_1388 [Escherichia coli str. K-12 subst... gi\|170519643, gi... - gi\|170681925\|ref\|YP_001743912.1\| hypothetical protein EcSMS35_1858 [Escherichia coli SMS-3-5], gi\|17... gi\|170123028, gi... - gi\|170768262\|ref\|ZP_02902715.1\| conserved hypothetical protein [Escherichia albertii TW07627], gi\|17... gi\|194416716, gi... - gi\|194435059\|ref\|ZP_03067298.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|195939208 - gi\|195939208\|ref\|ZP_03084590.1\| hypothetical protein EscherichcoliO157_22776 [Escherichia coli O157:... gi\|158273538, gi... - gi\|159481520\|ref\|XP_001698827.1\| hypothetical protein CHLREDRAFT_106211 [Chlamydomonas reinhardtii],... YCIN_ECOL6 - Protein yciN OS=Escherichia coli O6 GN=yciN PE=4 SV=1 gi\|188014779, gi... - gi\|188014779\|gb\|EDU52901.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168758358, gi... - gi\|189354833\|gb\|EDU73252.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168763579, gi... - gi\|189366259\|gb\|EDU84675.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168771272, gi... - gi\|189359943\|gb\|EDU78362.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168775082, gi... - gi\|187769326\|gb\|EDU33170.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168783776, gi... - gi\|188998927\|gb\|EDU67913.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|117623533, gi... - gi\|117623533\|ref\|YP_852446.1\| hypothetical protein APECO1_433 [Escherichia coli APEC O1], gi\|1155126... gi\|124528348, gi... - gi\|124528348\|ref\|ZP_01699658.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500580\|gb... EG12868 - DUF2498 protein YciN / DUF2498 family protein YCIN_SHIFL - Protein YciN OS=Shigella flexneri GN=yciN PE=1 SV=1 YCIN_ECOL6 - Protein YciN OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yciN PE=4 SV=1 gi\|13361310, gi\|... - gi\|15831099\|ref\|NP_309872.1\| hypothetical protein ECs1845 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|24051585, gi\|... - gi\|24112670\|ref\|NP_707180.1\| hypothetical protein SF1275 [Shigella flexneri 2a str. 301], gi\|2405158... gi\|110343097, gi... - gi\|110641505\|ref\|YP_669235.1\| hypothetical protein ECP_1323 [Escherichia coli 536], gi\|110343097\|gb\|... YCIN_ECO57 - Protein YciN OS=Escherichia coli O157:H7 GN=yciN PE=4 SV=1 gi\|227836502, gi... - gi\|227886298\|ref\|ZP_04004103.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783650... gi\|30041043, gi\|... - gi\|30062795\|ref\|NP_836966.1\| hypothetical protein S1360 [Shigella flexneri 2a str. 2457T], gi\|300410... gi\|237705297, gi... - gi\|237705297\|ref\|ZP_04535778.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|15801906, gi\|... - gi\|15801906\|ref\|NP_287926.1\| hypothetical protein Z2537 [Escherichia coli O157:H7 EDL933], gi\|125155... gi\|238900506, gi... - gi\|238900506\|ref\|YP_002926302.1\| hypothetical protein BWG_1102 [Escherichia coli BW2952], gi\|2388628... EG12868 - DUF2498 protein YciN / DUF2498 family protein gi\|251784778, gi... - gi\|251784778\|ref\|YP_002999082.1\| hypothetical protein B21_01259 [Escherichia coli BL21], gi\|24237705... gi\|89108119, gi\|... - gi\|89108119\|ref\|AP_001899.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|174... gi\|253324774, gi... - gi\|254288161\|ref\|YP_003053909.1\| hypothetical protein ECD_01249 [Escherichia coli BL21(DE3)], gi\|253... gi\|91072138, gi\|... - gi\|91210564\|ref\|YP_540550.1\| hypothetical protein UTI89_C1541 [Escherichia coli UTI89], gi\|91072138\|... gi\|253973254, gi... - gi\|254161353\|ref\|YP_003044461.1\| hypothetical protein ECB_01249 [Escherichia coli B str. REL606], gi...	135.0	[0..1]	[83..1]
gi\|73855835, gi\|... - gi\|74312358\|ref\|YP_310777.1\| hypothetical protein SSON_1870 [Shigella sonnei Ss046], gi\|73855835\|gb\|...	134.0	[0..1]	[83..1]
gi\|193069971, gi... - gi\|75235221\|ref\|ZP_00719458.1\| hypothetical protein EcolE1_01002931 [Escherichia coli E110019], gi\|1...	134.0	[0..1]	[83..1]
gi\|153950840, gi... - gi\|77629216\|ref\|ZP_00791802.1\| hypothetical protein YpseI_01000543 [Yersinia pseudotuberculosis IP 3...	134.0	[0..1]	[83..1]
gi\|54309642, gi\|... - gi\|54309642\|ref\|YP_130662.1\| hypothetical protein PBPRA2478 [Photobacterium profundum SS9], gi\|46914...	131.0	[0..4]	[83..3]
gi\|90326919, gi\|... - gi\|90412195\|ref\|ZP_01220201.1\| hypothetical protein P3TCK_27899 [Photobacterium profundum 3TCK], gi\|...	130.0	[0..4]	[83..3]
gi\|238794713, gi... - gi\|77977448\|ref\|ZP_00832896.1\| hypothetical protein YintA_01002743 [Yersinia intermedia ATCC 29909],...	129.0	[0..1]	[83..1]
gi\|28806008 - gi\|28806008\|dbj\|BAC59284.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28897795, gi\|... - gi\|28897795\|ref\|NP_797400.1\| hypothetical protein VP1021 [Vibrio parahaemolyticus RIMD 2210633], gi\|...	129.0	[0..4]	[82..3]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHKETQPIDR ETLLLEANKI IREHEDTMAG IVATGVTQRN GVLVFSGDYF LDEQGLPTPK  60
   61 STAVFNMFKH LAHVLSEKYH LVD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits