YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190692025, gi...
Organism:	synthetic construct
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190692025, gi....

Description	E-value	Query Range	Subject Range
gi\|114681760 - gi\|114681760\|ref\|XP_001154462.1\| PREDICTED: similar to EB1 [Pan troglodytes]	0.0	[1..257]	[57..313]
gi\|73945697 - gi\|73945697\|ref\|XP_851025.1\| PREDICTED: similar to Microtubule-associated protein RP/EB family membe...	0.0	[1..257]	[92..348]
MARE1_MOUSE - Microtubule-associated protein RP/EB family member 1 OS=Mus musculus GN=Mapre1 PE=1 SV=3	0.0	[1..257]	[1..257]
ENSCJAT00000030381 - null MARE1_PONAB - Microtubule-associated protein RP/EB family member 1 OS=Pongo abelii GN=MAPRE1 PE=2 SV=3 MARE1_PONPY - Microtubule-associated protein RP/EB family member 1 - Pongo pygmaeus (Orangutan)	0.0	[1..257]	[1..257]
MARE1_RAT - Microtubule-associated protein RP/EB family member 1 OS=Rattus norvegicus GN=Mapre1 PE=1 SV=3	0.0	[1..257]	[1..257]
gi\|62901938 - gi\|62901938\|gb\|AAY18920.1\| microtubule-associated protein [synthetic construct]	0.0	[2..257]	[26..281]
gi\|81174752, gi\|... - gi\|81174752\|gb\|ABB58918.1\| microtubule-associated protein RP/EB family member 1 [Sus scrofa], gi\|113...	0.0	[1..257]	[1..257]
gi\|109092371, gi... - gi\|109092375\|ref\|XP_001106799.1\| PREDICTED: microtubule-associated protein, RP/EB family, member 1 i...	0.0	[1..257]	[1..257]
MARE1_BOVIN - Microtubule-associated protein RP/EB family member 1 OS=Bos taurus GN=MAPRE1 PE=2 SV=3	0.0	[1..257]	[1..257]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNVYSTSV TSDNLSRHDM LAWINESLQL NLTKIEQLCS GAAYCQFMDM LFPGSIALKK  60
   61 VKFQAKLEHE YIQNFKILQA GFKRMGVDKI IPVDKLVKGK FQDNFEFVQW FKKFFDANYD 120
  121 GKDYDPVAAR QGQETAVAPS LVAPALNKPK KPLTSSSAAP QRPISTQRTA AAPKAGPGVV 180
  181 RK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.154902
Match:	1wyoA
Description:	Solution structure of the CH domain of human microtubule-associated protein RP/EB family member 3
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [183-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPGVGNGDDE AAELMQQVNV LKLTVEDLEK ERDFYFGKLR NIELICQENE GENDPVLQRI  60
   61 VDILYATDEG FVIPDEGGPQ EEQEEY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1txqB
Description:	Crystal structure of the EB1 C-terminal domain complexed with the CAP-Gly domain of p150Glued
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits